WormBase Tree Display for Gene: WBGene00004398
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| WBGene00004398 | SMap | S_parent | Sequence | ZK1290 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rol-8 | Person_evidence | WBPerson261 | |||||
| Sequence_name | ZK1290.3 | ||||||||
| Molecular_name | ZK1290.3 | ||||||||
| ZK1290.3.1 | |||||||||
| CE29156 | |||||||||
| Other_name | col6 | Accession_evidence | EMBL | M25477 | |||||
| col-6 | Paper_evidence | WBPaper00001927 | |||||||
| CELE_ZK1290.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | rol-8 | ||||||||
| DB_info | Database | AceView | gene | 2H835 | |||||
| WormQTL | gene | WBGene00004398 | |||||||
| WormFlux | gene | WBGene00004398 | |||||||
| NDB | locus_tag | CELE_ZK1290.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004398|UniProtKB=P18831 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 174226 | |||||||
| RefSeq | protein | NM_063181.7 | |||||||
| SwissProt | UniProtAcc | P18831 | |||||||
| UniProt_GCRP | UniProtAcc | P18831 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rol | ||||||||
| Reference_allele | WBVar00242674 | ||||||||
| Allele (21) | |||||||||
| Legacy_information | sc15 : adults left-handed rollers. NA2. | ||||||||
| [C.elegansII] sc15 : adults left-handed rollers. OA1: sc102. [Kusch and Edgar 1986; BE] | |||||||||
| Transcript present in dauer larvae. | |||||||||
| [C.elegansII] NMK. Transcript abundant only in dauer larvae. Encodes collagen, col-6 family includes col-12,13,14,36,40. [Cox and Hirsh 1985] | |||||||||
| Strain | WBStrain00003803 | ||||||||
| WBStrain00003788 | |||||||||
| WBStrain00003799 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039606 | ||||||||
| 00039607 | |||||||||
| 00039608 | |||||||||
| 00112775 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | rol-8 encodes a collagen that is enriched in dauer larvae; mutations cause adults to become left-handed rollers. | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00013735 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1290.3 | |||||||
| Corresponding_CDS_history | ZK1290.3b:wp274 | ||||||||
| Corresponding_transcript | ZK1290.3.1 | ||||||||
| Other_sequence (223) | |||||||||
| Associated_feature | WBsf988470 | ||||||||
| WBsf988471 | |||||||||
| WBsf1012548 | |||||||||
| WBsf1012549 | |||||||||
| WBsf221608 | |||||||||
| WBsf221609 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr762 | ||||||||
| Expr1022612 | |||||||||
| Expr1032208 | |||||||||
| Expr1162631 | |||||||||
| Expr2015405 | |||||||||
| Expr2033640 | |||||||||
| Drives_construct | WBCnstr00035511 | ||||||||
| Construct_product | WBCnstr00035511 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (323) | |||||||||
| Interaction (119) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | II | Position | 0.504391 | Error | 0.000111 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | COL6 | |||||||
| ZK1290 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | 2_point | 1523 | |||||||
| 2596 | |||||||||
| 2597 | |||||||||
| Multi_point | 836 | ||||||||
| 837 | |||||||||
| 1054 | |||||||||
| 1243 | |||||||||
| 4733 | |||||||||
| 4797 | |||||||||
| 5523 | |||||||||
| Pos_neg_data (7) | |||||||||
| Reference (36) | |||||||||
| Method | Gene |
