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WormBase Tree Display for Gene: WBGene00004267

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Name Class

WBGene00004267SMapS_parentSequenceC18A3
IdentityVersion1
NameCGC_namerab-3Person_evidenceWBPerson451
Sequence_nameC18A3.6
Molecular_nameC18A3.6a
C18A3.6a.1
CE23555
C18A3.6b
CE20518
C18A3.6b.1
Other_nameRAB3/A
rbl-3
rab3Accession_evidenceEMBLAB112928
CELE_C18A3.6Accession_evidenceNDBBX284602
Public_namerab-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrab
Allele (101)
Legacy_information[C.elegansII] y250 : mild Unc, Che, Egl defects; Ric.OA1: y251 (similar; both y250 and y251 are missense alleles). Encodes homolog of mammalian rab3 (73% identity to human Rab3a). Dominant negative transgene leads to Ric, some Unc, or L1 lethality like cha-1(0). [NM]
Strain (11)
RNASeq_FPKM (74)
GO_annotation (37)
OrthologWBGene00057294Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025534Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00157945Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00136916Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192821Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00207625Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00222549Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6638Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6840Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5496Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22106Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12252Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4339Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13873Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3737Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1631Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7064Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00173.g6195Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rab-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19397Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00079.g3583Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04399Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006107Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02357Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17312Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20115110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4595Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247136Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00114709Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266307Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00302452Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0005586Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-263Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-428Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-040801-2Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041210-268Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050208-660Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-080722-14Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9777Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9778Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:9779Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:30269Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:97843Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:97844Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1914545Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1917158Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:3528Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620922Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620924Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620923Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (32)
Structured_descriptionConcise_descriptionrab-3 encodes a rab3 homolog, a member of the Ras GTPase superfamily, and affects sensitivity to aldicarb and the distribution of synaptic vesicle populations and thereby affects synaptic transmission, track amplitude and speed of movement, chemotaxis to isoamyl alcohol, affects pharyngeal pump durations, and may only slightly affect male mating behavior; requires aex-3 for localization to synapse-rich regions in axons and it is expressed in most or all neurons.Paper_evidenceWBPaper00002776
WBPaper00002918
WBPaper00004331
WBPaper00005654
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable GTPase activity and myosin V binding activity. Involved in several processes, including positive regulation of anterior/posterior axon guidance; regulation of GABAergic synaptic transmission; and ventral cord development. Located in neuron projection and synaptic vesicle. Expressed in nervous system; neurons; and uv1. Used to study alcohol use disorder and epilepsy. Is an ortholog of human RAB3A (RAB3A, member RAS oncogene family).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:1574Homo sapiensPaper_evidenceWBPaper00031669
Curator_confirmedWBPerson324
Date_last_updated13 Jun 2019 00:00:00
DOID:1826Homo sapiensPaper_evidenceWBPaper00035198
Curator_confirmedWBPerson38202
Date_last_updated04 Jun 2018 00:00:00
Models_disease_assertedWBDOannot00000559
WBDOannot00000713
Molecular_infoCorresponding_CDSC18A3.6a
C18A3.6b
Corresponding_transcriptC18A3.6a.1
C18A3.6b.1
Other_sequence (26)
Associated_feature (13)
Experimental_infoRNAi_result (17)
Expr_pattern (15)
Drives_construct (108)
Construct_product (92)
AntibodyWBAntibody00000151
WBAntibody00000729
WBAntibody00001350
WBAntibody00001587
Microarray_results (28)
Expression_cluster (233)
Interaction (66)
Map_infoMapIIPosition-0.958332Error0.001327
Well_ordered
PositivePositive_cloneC02C12Author_evidenceNonet MI
C18A3Inferred_automaticallyFrom sequence, transcript, pseudogene data
F11G1Author_evidenceNonet MI
Mapping_dataMulti_point3342
3346
Reference (180)
MethodGene