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WormBase Tree Display for Gene: WBGene00004210

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Name Class

WBGene00004210EvidenceCGC_data_submission
SMapS_parentSequenceY110A2AL
IdentityVersion1
NameCGC_nameptc-3Person_evidenceWBPerson349
Sequence_nameY110A2AL.8
Molecular_nameY110A2AL.8a
Y110A2AL.8a.1
CE37163
Y110A2AL.8b
CE37164
Y110A2AL.8c
CE42182
Y110A2AL.8b.1
Y110A2AL.8c.1
Other_nameY110A2AL.jCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y110A2AL.8Accession_evidenceNDBBX284602
Public_nameptc-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptc
Allele (195)
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00054608Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026178Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00038774Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00125202Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00190909Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00194403Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00095143Pristionchus pacificusFrom_analysisOMA
WBGene00232553Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6901Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16031Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7688Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16005Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22922Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g3092Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g3093Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2546Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12605Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1610Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g18827Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20778Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00080.g3669Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_26688.g27449Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ptc-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14605Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00532.g12520Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_006798Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08689Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22858Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20042710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3803Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00209054Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00247995Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277225Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263632Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0003892Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-980526-196Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9585Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9586Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:105373Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1095405Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:621425Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (31)
Structured_descriptionConcise_descriptionptc-3 encodes an ortholog of Drosophila PATCHED (PTC) and human PTCH(OMIM:601309, mutated in basal cell nevus syndrome), which defines oneof seven paralogous families of sterol sensing domain (SSD) proteins;PTC-3 is strongly required for normal molting from L1 to L3 larvalstages; PTC-3 is also required for normal growth to full size and forviability.Paper_evidenceWBPaper00004265
WBPaper00026841
WBPaper00027263
Curator_confirmedWBPerson567
Date_last_updated08 Nov 2006 00:00:00
Automated_descriptionPredicted to enable hedgehog family protein binding activity; hedgehog receptor activity; and smoothened binding activity. Involved in molting cycle. Located in apical plasma membrane and cytoplasmic vesicle. Expressed in several structures, including CEP; cloaca; egg-laying apparatus; excretory duct; and preanal ganglion. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); colorectal adenoma; and holoprosencephaly 7. Is an ortholog of human PTCH1 (patched 1) and PTCH2 (patched 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (18)
Molecular_infoCorresponding_CDSY110A2AL.8a
Y110A2AL.8b
Y110A2AL.8c
Corresponding_CDS_historyY110A2AL.8a:wp127
Y110A2AL.8b:wp127
Corresponding_transcriptY110A2AL.8a.1
Y110A2AL.8b.1
Y110A2AL.8c.1
Other_sequence (34)
Associated_feature (13)
Experimental_info (9)
Map_infoMapIIPosition-9.82406Error0.084736
PositivePositive_cloneY110A2ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (21)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene