WormBase Tree Display for Gene: WBGene00004210
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WBGene00004210 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y110A2AL | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | ptc-3 | Person_evidence | WBPerson349 | |||||
Sequence_name | Y110A2AL.8 | ||||||||
Molecular_name | Y110A2AL.8a | ||||||||
Y110A2AL.8a.1 | |||||||||
CE37163 | |||||||||
Y110A2AL.8b | |||||||||
CE37164 | |||||||||
Y110A2AL.8c | |||||||||
CE42182 | |||||||||
Y110A2AL.8b.1 | |||||||||
Y110A2AL.8c.1 | |||||||||
Other_name | Y110A2AL.j | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y110A2AL.8 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | ptc-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ptc | ||||||||
Allele (195) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (41) | |||||||||
Paralog (31) | |||||||||
Structured_description | Concise_description | ptc-3 encodes an ortholog of Drosophila PATCHED (PTC) and human PTCH(OMIM:601309, mutated in basal cell nevus syndrome), which defines oneof seven paralogous families of sterol sensing domain (SSD) proteins;PTC-3 is strongly required for normal molting from L1 to L3 larvalstages; PTC-3 is also required for normal growth to full size and forviability. | Paper_evidence | WBPaper00004265 | |||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable hedgehog family protein binding activity; hedgehog receptor activity; and smoothened binding activity. Involved in molting cycle. Located in apical plasma membrane and cytoplasmic vesicle. Expressed in several structures, including CEP; cloaca; egg-laying apparatus; excretory duct; and preanal ganglion. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); colorectal adenoma; and holoprosencephaly 7. Is an ortholog of human PTCH1 (patched 1) and PTCH2 (patched 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (18) | ||||||||
Molecular_info | Corresponding_CDS | Y110A2AL.8a | |||||||
Y110A2AL.8b | |||||||||
Y110A2AL.8c | |||||||||
Corresponding_CDS_history | Y110A2AL.8a:wp127 | ||||||||
Y110A2AL.8b:wp127 | |||||||||
Corresponding_transcript | Y110A2AL.8a.1 | ||||||||
Y110A2AL.8b.1 | |||||||||
Y110A2AL.8c.1 | |||||||||
Other_sequence (34) | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr9231 | ||||||||
Expr9232 | |||||||||
Expr1017786 | |||||||||
Expr1032067 | |||||||||
Expr1158842 | |||||||||
Expr2015145 | |||||||||
Expr2033383 | |||||||||
Drives_construct | WBCnstr00008494 | ||||||||
WBCnstr00008496 | |||||||||
WBCnstr00035634 | |||||||||
Construct_product | WBCnstr00008494 | ||||||||
WBCnstr00008495 | |||||||||
WBCnstr00008496 | |||||||||
WBCnstr00008497 | |||||||||
WBCnstr00008498 | |||||||||
WBCnstr00008502 | |||||||||
WBCnstr00035634 | |||||||||
Antibody | WBAntibody00002998 | ||||||||
Microarray_results | SMD_Y110A2A_54.D | ||||||||
SMD_Y110A2A_54.E | |||||||||
SMD_Y110A2A_54.I | |||||||||
187353_s_at | |||||||||
A_12_P117808 | |||||||||
A_12_P161578 | |||||||||
A_12_P161579 | |||||||||
A_12_P161580 | |||||||||
Aff_Y110A2A_54.D | |||||||||
Aff_Y110A2A_54.E | |||||||||
GPL13394_WBGene00004210 | |||||||||
GPL13914_Y110A2AL.8 | |||||||||
GPL14144_Y110A2AL.8c_2887-2946_0.730_145_A | |||||||||
GPL14144_Y110A2AL.8c_3356-3415_0.530_476_C | |||||||||
GPL14144_Y110A2AL.8c_3507-3566_0.911_1_B | |||||||||
GPL19516_CGZ0042156 | |||||||||
GPL19516_CGZ0042157 | |||||||||
GPL19516_CGZ0042158 | |||||||||
GPL21109_Y110A2AL.8a | |||||||||
GPL3518_CE29096 | |||||||||
GPL8304_CE_WBGene00004210_A | |||||||||
GPL8673_Y110A2AL_8aP02819 | |||||||||
GPL8673_Y110A2AL_8aP02965 | |||||||||
GPL8673_Y110A2AL_8aP03655 | |||||||||
GPL8673_Y110A2AL_8bP02828 | |||||||||
GPL8673_Y110A2AL_8bP02974 | |||||||||
GPL8673_Y110A2AL_8bP03664 | |||||||||
GPL9450_Y110A2AL.8a | |||||||||
GPL9450_Y110A2AL.8b | |||||||||
cea2.d.08081 | |||||||||
cea2.d.42139 | |||||||||
Expression_cluster (200) | |||||||||
Interaction (78) | |||||||||
WBProcess | WBbiopr:00000123 | ||||||||
Map_info | Map | II | Position | -9.82406 | Error | 0.084736 | |||
Positive | Positive_clone | Y110A2AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (21) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |