WormBase Tree Display for Gene: WBGene00004168

WBGene00004168 SMap: S_parent: Sequence: Y71G12B
  Identity: Version: 1
    Name: CGC_name: pqn-88 Person_evidence: WBPerson625
      Sequence_name: Y71G12B.21
      Molecular_name: Y71G12B.21
        Y71G12B.21.1
        CE22925
      Other_name: CELE_Y71G12B.21 Accession_evidence: NDB BX284601
      Public_name: pqn-88
    DB_info: Database: AceView gene 1C130
        WormQTL gene WBGene00004168
        WormFlux gene WBGene00004168
        NDB locus_tag CELE_Y71G12B.21
        NCBI gene 171728
        RefSeq protein NM_058476.5
        TrEMBL UniProtAcc Q95XP2
        UniProt_GCRP UniProtAcc Q95XP2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pqn
    Allele (30)
    RNASeq_FPKM (74)
    Ortholog: WBGene00040777 Caenorhabditis briggsae From_analysis: Hillier-set
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00158699 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00060502 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00184326 Caenorhabditis japonica From_analysis: Inparanoid_8
      CSP26.g551 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP32.g1421 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP40.g21072 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-pqn-88 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8507 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01397.g20664 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17361 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001164 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g220 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in MSaapaapa; MSpapaapa; and pharyngeal gland cell based on single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including hydrogen sulfide; Psoralens; and allantoin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71G12B.21
    Corresponding_transcript: Y71G12B.21.1
    Other_sequence: CBC02515_1
      CR12074
      BMC06304_1
      MH05103
      CRC08221_1
    Associated_feature: WBsf218984
  Experimental_info: RNAi_result: WBRNAi00058208 Inferred_automatically: RNAi_primary
      WBRNAi00002298 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024816
      Expr1161624
      Expr2015079
      Expr2033315
    Drives_construct: WBCnstr00035659
    Construct_product: WBCnstr00035659
    Microarray_results (16)
    Expression_cluster (111)
  Map_info: Map: I Position: -13.5267 Error: 0.044607
    Positive: Positive_clone: Y71G12B Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene