WormBase Tree Display for Gene: WBGene00004144
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WBGene00004144 | SMap | S_parent | Sequence | R11G11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | srlf-35 | Person_evidence | WBPerson260 | |||||
Sequence_name | R11G11.7 | ||||||||
Molecular_name | R11G11.7 | ||||||||
R11G11.7.1 | |||||||||
CE12752 | |||||||||
Other_name | pqn-60 | Person_evidence | WBPerson260 | ||||||
CELE_R11G11.7 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | srlf-35 | ||||||||
DB_info | Database | AceView | gene | 5A979 | |||||
WormQTL | gene | WBGene00004144 | |||||||
WormFlux | gene | WBGene00004144 | |||||||
NDB | locus_tag | CELE_R11G11.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004144|UniProtKB=O16948 | |||||||
family | PTHR21593 | ||||||||
NCBI | gene | 187826 | |||||||
RefSeq | protein | NM_070824.2 | |||||||
TREEFAM | TREEFAM_ID | TF316074 | |||||||
TrEMBL | UniProtAcc | O16948 | |||||||
UniProt_GCRP | UniProtAcc | O16948 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 02 Mar 2022 23:57:00 | WBPerson51134 | Name_change | CGC_name | srlf-35 | ||||
Other_name | pqn-60 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srlf | ||||||||
Allele (39) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00029013 | ||||||||
00029014 | |||||||||
Ortholog | WBGene00070712 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
WormBase-Compara | |||||||||
WBGene00030214 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WormBase-Compara | |||||||||
WBGene00145028 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00041063 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
CBOVI.g8112 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g18451 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP26.g18452 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP26.g8268 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g10948 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g7649 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g7841 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g10159 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g15123 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g8413 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g15568 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
CSP40.g16010 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
CSP40.g16011 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_IV.g16146 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g15286 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00214.g7202 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00598.g13353 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_03648.g30856 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_03648.g30857 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_15683 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_016283 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_50017400 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g13021 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (39) | |||||||||
Structured_description | Concise_description | pqn-60 encodes a 154-residue, glutamine/asparagine (Q/N)-rich('prion'-like) protein, predicted to have coiled-coil structure, withmany paralogs in nematodes but no obvious non-nematode orthologs; PQN-60inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1,RAD-50, and RAD-51. | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
WBPaper00023909 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 21 Apr 2007 00:00:00 | ||||||||
Automated_description | Enriched in ABaraapapaa; ABaraapppaa; arcade cell; and pharynx based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty chemicals including methylmercuric chloride; Mercuric Chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: SXP/RAL-2 family protein Ani s 5-like, metal-binding domain and SXP/RAL-2 family protein Ani s 5-like, cation-binding domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R11G11.7 | |||||||
Corresponding_transcript | R11G11.7.1 | ||||||||
Associated_feature | WBsf979050 | ||||||||
WBsf231344 | |||||||||
WBsf231345 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | V | Position | -19.9855 | |||||
Positive | Positive_clone | R11G11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |