WormBase Tree Display for Gene: WBGene00004121
expand all nodes | collapse all nodes | view schema
| WBGene00004121 | SMap | S_parent | Sequence | F35B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ptrn-1 | Person_evidence | WBPerson105 | |||||
| Sequence_name | F35B3.5 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | pqn-34 | Person_evidence | WBPerson625 | ||||||
| CELE_F35B3.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ptrn-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 21 Dec 2012 09:25:09 | WBPerson2970 | Name_change | CGC_name | ptrn-1 | ||||
| Other_name | pqn-34 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptrn | ||||||||
| Allele (123) | |||||||||
| Possibly_affected_by | WBVar02152829 | ||||||||
| WBVar02153052 | |||||||||
| Strain | WBStrain00029074 | ||||||||
| WBStrain00029075 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (45) | |||||||||
| Structured_description | Automated_description | Enables microtubule minus-end binding activity. Involved in cytoplasmic microtubule organization and nematode larval development. Located in microtubule minus-end. Expressed in hypodermis; intestine; nervous system; and pharynx. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Is an ortholog of human CAMSAP1 (calmodulin regulated spectrin associated protein 1); CAMSAP2 (calmodulin regulated spectrin associated protein family member 2); and CAMSAP3 (calmodulin regulated spectrin associated protein family member 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0090131 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19946) | ||||
| Molecular_info | Corresponding_CDS | F35B3.5a | |||||||
| F35B3.5c | |||||||||
| F35B3.5d | |||||||||
| F35B3.5e | |||||||||
| Corresponding_CDS_history | F35B3.5a:wp137 | ||||||||
| F35B3.5a:wp238 | |||||||||
| F35B3.5b:wp241 | |||||||||
| Corresponding_transcript | F35B3.5b | ||||||||
| F35B3.5a.1 | |||||||||
| F35B3.5c.1 | |||||||||
| F35B3.5d.1 | |||||||||
| F35B3.5e.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046282 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014292 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (17) | |||||||||
| Drives_construct | WBCnstr00019023 | ||||||||
| WBCnstr00019024 | |||||||||
| WBCnstr00019026 | |||||||||
| WBCnstr00019960 | |||||||||
| WBCnstr00020914 | |||||||||
| WBCnstr00020915 | |||||||||
| WBCnstr00020916 | |||||||||
| WBCnstr00037939 | |||||||||
| Construct_product (16) | |||||||||
| Regulate_expr_cluster | WBPaper00056039:ptrn-1(tm5597)_downregulated | ||||||||
| WBPaper00056039:ptrn-1(tm5597)_upregulated | |||||||||
| Antibody | WBAntibody00002655 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (86) | |||||||||
| Anatomy_function | WBbtf0643 | ||||||||
| WBbtf0644 | |||||||||
| WBbtf0645 | |||||||||
| Map_info | Map | X | Position | 24.0718 | Error | 0.001129 | |||
| Positive | Positive_clone | F35B3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
