WormBase Tree Display for Gene: WBGene00004104
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| WBGene00004104 | SMap | S_parent | Sequence | C14C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-13 | Person_evidence | WBPerson625 | |||||
| Sequence_name | C14C11.8 | ||||||||
| Molecular_name | C14C11.8a | ||||||||
| C14C11.8a.1 | |||||||||
| CE36269 | |||||||||
| C14C11.8b | |||||||||
| CE27684 | |||||||||
| C14C11.8b.1 | |||||||||
| Other_name | CELE_C14C11.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pqn-13 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00004104 | |||||
| WormFlux | gene | WBGene00004104 | |||||||
| NDB | locus_tag | CELE_C14C11.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004104|UniProtKB=H2KYR7 | |||||||
| family | PTHR31895 | ||||||||
| NCBI | gene | 178954 | |||||||
| RefSeq | protein | NM_072093.7 | |||||||
| NM_001129376.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF316329 | |||||||
| TrEMBL | UniProtAcc | H2KYR7 | |||||||
| Q17982 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYR7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (91) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (28) | |||||||||
| Paralog (26) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including head mesodermal cell; neurons; pharyngeal-intestinal valve; pharynx; and posterior arcade cell based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-eight chemicals including 1-methylnicotinamide; methylmercuric chloride; and manganese chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Cysteine rich repeat, tripleX and Cysteine rich repeat. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C14C11.8a | |||||||
| C14C11.8b | |||||||||
| Corresponding_CDS_history | C14C11.8:wp114 | ||||||||
| C14C11.8:wp185 | |||||||||
| Corresponding_transcript | C14C11.8a.1 | ||||||||
| C14C11.8b.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf1000058 | ||||||||
| WBsf1000059 | |||||||||
| WBsf1000060 | |||||||||
| WBsf1000061 | |||||||||
| WBsf1019669 | |||||||||
| WBsf1019670 | |||||||||
| WBsf233711 | |||||||||
| WBsf233712 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1011286 | ||||||||
| Expr1031983 | |||||||||
| Expr1144589 | |||||||||
| Expr2015033 | |||||||||
| Expr2033268 | |||||||||
| Drives_construct | WBCnstr00035693 | ||||||||
| Construct_product | WBCnstr00035693 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (238) | |||||||||
| Interaction (215) | |||||||||
| Map_info | Map | V | Position | -1.25962 | Error | 0.014854 | |||
| Positive | Positive_clone | C14C11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
