WormBase Tree Display for Gene: WBGene00004091
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| WBGene00004091 | Evidence | Author_evidence | Bergeron KF | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T14G10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pps-1 | |||||||
| Sequence_name | T14G10.1 | ||||||||
| Molecular_name | T14G10.1a | ||||||||
| T14G10.1a.1 | |||||||||
| CE06447 | |||||||||
| T14G10.1b | |||||||||
| CE49754 | |||||||||
| T14G10.1b.1 | |||||||||
| Other_name | CELE_T14G10.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pps-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pps | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00036362 | ||||||||
| WBStrain00007579 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP4619 | ||||||||
| Ortholog (47) | |||||||||
| Structured_description | Concise_description | pps-1 is orthologous to human PAPSS1 (OMIM:603262) and human PAPSS2 (OMIM:603005, mutated in spondyloepimetaphyseal dysplasia). | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable adenylylsulfate kinase activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Predicted to be located in nucleus. Expressed in epithelial cell and pharyngeal gland cell. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia, Pakistani type. Is an ortholog of human PAPSS1 (3'-phosphoadenosine 5'-phosphosulfate synthase 1) and PAPSS2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050812 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8604) | ||||
| Molecular_info | Corresponding_CDS | T14G10.1a | |||||||
| T14G10.1b | |||||||||
| Corresponding_transcript | T14G10.1a.1 | ||||||||
| T14G10.1b.1 | |||||||||
| Other_sequence (83) | |||||||||
| Associated_feature | WBsf646287 | ||||||||
| WBsf660559 | |||||||||
| WBsf976943 | |||||||||
| WBsf976944 | |||||||||
| WBsf228949 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00115318 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035569 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070597 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070596 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1959 | ||||||||
| Expr4395 | |||||||||
| Expr4396 | |||||||||
| Expr6696 | |||||||||
| Expr1016543 | |||||||||
| Expr1031975 | |||||||||
| Expr1156916 | |||||||||
| Expr2015021 | |||||||||
| Expr2033256 | |||||||||
| Drives_construct | WBCnstr00002978 | ||||||||
| WBCnstr00011963 | |||||||||
| WBCnstr00011964 | |||||||||
| WBCnstr00035705 | |||||||||
| Construct_product | WBCnstr00011964 | ||||||||
| WBCnstr00035705 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | IV | Position | 4.5514 | Error | 0.001015 | |||
| Positive | Positive_clone | T14G10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5525 | |||||||
| 4743 | |||||||||
| 5002 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027123 | ||||||||
| WBPaper00027857 | |||||||||
| WBPaper00031295 | |||||||||
| WBPaper00033574 | |||||||||
| WBPaper00035539 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040922 | |||||||||
| WBPaper00045573 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
