WormBase Tree Display for Gene: WBGene00004084
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| WBGene00004084 | SMap | S_parent | Sequence | C29E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pph-2 | Person_evidence | WBPerson634 | |||||
| Sequence_name | C29E6.3 | ||||||||
| Molecular_name | C29E6.3 | ||||||||
| C29E6.3.1 | |||||||||
| CE17478 | |||||||||
| Other_name | pph2A-c | ||||||||
| CELE_C29E6.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pph-2 | ||||||||
| DB_info | Database | AceView | gene | 4M640 | |||||
| WormQTL | gene | WBGene00004084 | |||||||
| WormFlux | gene | WBGene00004084 | |||||||
| NDB | locus_tag | CELE_C29E6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004084|UniProtKB=Q18301 | |||||||
| family | PTHR23219 | ||||||||
| NCBI | gene | 178119 | |||||||
| RefSeq | protein | NM_069850.3 | |||||||
| TREEFAM | TREEFAM_ID | TF321196 | |||||||
| TrEMBL | UniProtAcc | Q18301 | |||||||
| UniProt_GCRP | UniProtAcc | Q18301 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pph | ||||||||
| Allele (21) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00112359 | ||||||||
| 00112360 | |||||||||
| Ortholog (36) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tyrosine phosphatase activity. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29E6.3 | |||||||
| Corresponding_transcript | C29E6.3.1 | ||||||||
| Other_sequence | CJC02481_1 | ||||||||
| EX539617.1 | |||||||||
| ACC11922_1 | |||||||||
| Acan_isotig15946 | |||||||||
| Associated_feature | WBsf230929 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022171 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029314 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103667 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041457 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015076 | ||||||||
| Expr1145486 | |||||||||
| Expr2015011 | |||||||||
| Expr2033246 | |||||||||
| Microarray_results | SMD_C29E6.3 | ||||||||
| SMD_C29E6.3:2 | |||||||||
| Aff_C29E6.3 | |||||||||
| GPL3518_CE17478 | |||||||||
| GPL8673_C29E6_3P00367 | |||||||||
| GPL9450_C29E6.3 | |||||||||
| cea2.d.14767 | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | IV | Position | 5.35889 | Error | 0.001763 | |||
| Positive | Positive_clone | C29E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| YO#CP31 | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Sequence connection from [Oshima Y] | ||||||||
| Gene created from renaming pph2A-c krb 28/02/02 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
