WormBase Tree Display for Gene: WBGene00003939
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WBGene00003939 | Evidence | Person_evidence | WBPerson96 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_II | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pax | ||||||
Allele (109) | |||||||
Strain | WBStrain00028931 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (46) | |||||||
Paralog (22) | |||||||
Structured_description | Concise_description | pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes). | Paper_evidence | WBPaper00005654 | |||
WBPaper00006395 | |||||||
WBPaper00012756 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epidermal cell fate specification; gonad morphogenesis; and hemidesmosome assembly. Located in nucleus. Expressed in several structures, including AB lineage cell; E lineage cell; P9/10L; hypodermal cell; and tail. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma and congenital myopathy 19. Is an ortholog of human PAX7 (paired box 7). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0081351 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8621) | ||
DOID:4051 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8621) | ||||
Molecular_info | Corresponding_CDS | F27E5.2 | |||||
Corresponding_CDS_history | F27E5.2:wp111 | ||||||
Corresponding_transcript | F27E5.2.1 | ||||||
Other_sequence (13) | |||||||
Associated_feature (18) | |||||||
Transcription_factor | WBTranscriptionFactor000298 | ||||||
Experimental_info | RNAi_result (16) | ||||||
Expr_pattern (13) | |||||||
Drives_construct | WBCnstr00005879 | ||||||
WBCnstr00005880 | |||||||
WBCnstr00005881 | |||||||
WBCnstr00005882 | |||||||
WBCnstr00012916 | |||||||
WBCnstr00014228 | |||||||
WBCnstr00015305 | |||||||
WBCnstr00015306 | |||||||
WBCnstr00035784 | |||||||
Construct_product | WBCnstr00035784 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (94) | |||||||
Interaction (139) | |||||||
Map_info | Map | II | Position | 2.03217 | Error | 0.043029 | |
Positive | Positive_clone | F27E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5093 | |||||
Pseudo_map_position | |||||||
Reference (18) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |