WormBase Tree Display for Gene: WBGene00003879
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| WBGene00003879 | SMap | S_parent | Sequence | F57H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ora-1 | Person_evidence | WBPerson247 | |||||
| Sequence_name | F57H12.3 | ||||||||
| Molecular_name | F57H12.3 | ||||||||
| F57H12.3.1 | |||||||||
| CE17124 | |||||||||
| Other_name | CELE_F57H12.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ora-1 | ||||||||
| DB_info | Database | AceView | gene | 4I743 | |||||
| WormQTL | gene | WBGene00003879 | |||||||
| WormFlux | gene | WBGene00003879 | |||||||
| NDB | locus_tag | CELE_F57H12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003879|UniProtKB=O45098 | |||||||
| family | PTHR21593 | ||||||||
| NCBI | gene | 191739 | |||||||
| RefSeq | protein | NM_068933.8 | |||||||
| TREEFAM | TREEFAM_ID | TF316270 | |||||||
| TrEMBL | UniProtAcc | O45098 | |||||||
| UniProt_GCRP | UniProtAcc | O45098 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ora | ||||||||
| Allele (26) | |||||||||
| Legacy_information | [C.elegansII] eDf28 : (pka e927) deletes unc-24 and ora-1, no apparent phenotype other than Unc-24. Encodes predicted protein related to 22kD antigenic protein from Onchocerca volvulus. [MQ] | ||||||||
| Strain | WBStrain00032745 | ||||||||
| WBStrain00032760 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (38) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABplapaaaa; BDU; cholinergic neurons; posterior arcade cell; and touch receptor neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty chemicals including methylmercury hydroxide; 1-methylnicotinamide; and rotenone based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57H12.3 | |||||||
| Corresponding_transcript | F57H12.3.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf228606 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00015924 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048914 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021112 | ||||||||
| Expr1152653 | |||||||||
| Expr2014631 | |||||||||
| Expr2032864 | |||||||||
| Drives_construct | WBCnstr00035817 | ||||||||
| Construct_product | WBCnstr00035817 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (281) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | IV | Position | 3.51179 | Error | 0.001027 | |||
| Positive | Positive_clone | F57H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015196 | ||||||||
| WBPaper00031478 | |||||||||
| WBPaper00061421 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
