WormBase Tree Display for Gene: WBGene00003827
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| WBGene00003827 | Evidence | Person_evidence | WBPerson2661 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C49H3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ntl-4 | |||||||
| Sequence_name | C49H3.5 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_C49H3.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ntl-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ntl | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00092931 | ||||||||
| 00092932 | |||||||||
| 00092933 | |||||||||
| 00092934 | |||||||||
| 00092935 | |||||||||
| 00092936 | |||||||||
| 00092937 | |||||||||
| 00111864 | |||||||||
| 00111865 | |||||||||
| 00111866 | |||||||||
| Contained_in_operon | CEOP4264 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | ntl-4 encodes two proteins by alternative splicing, one of which (NTL-4A) has an N-terminal RING finger and a RNA recognition motif ('RRM', 'RBD', or 'RNP'), and both of which have glutamine/asparagine-rich domains. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be part of CCR4-NOT complex. Is an ortholog of human CNOT4 (CCR4-NOT transcription complex subunit 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C49H3.5a | |||||||
| C49H3.5c | |||||||||
| C49H3.5d | |||||||||
| C49H3.5e | |||||||||
| Corresponding_CDS_history | C49H3.5b:wp241 | ||||||||
| Corresponding_transcript | C49H3.5b | ||||||||
| C49H3.5a.1 | |||||||||
| C49H3.5c.1 | |||||||||
| C49H3.5d.1 | |||||||||
| C49H3.5e.1 | |||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf646125 | ||||||||
| WBsf655030 | |||||||||
| WBsf659837 | |||||||||
| WBsf997076 | |||||||||
| WBsf997077 | |||||||||
| WBsf228594 | |||||||||
| WBsf228595 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1027518 | ||||||||
| Expr1031802 | |||||||||
| Expr1146817 | |||||||||
| Expr2014514 | |||||||||
| Expr2032753 | |||||||||
| Drives_construct | WBCnstr00035849 | ||||||||
| Construct_product | WBCnstr00035849 | ||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | IV | Position | 3.49652 | Error | 0.000174 | |||
| Positive | Positive_clone | C49H3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027315 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043886 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060420 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
