WormBase Tree Display for Gene: WBGene00003813
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| WBGene00003813 | SMap | S_parent | Sequence | C08B11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nrf-6 | Person_evidence | WBPerson655 | |||||
| Sequence_name | C08B11.4 | ||||||||
| Molecular_name | C08B11.4 | ||||||||
| C08B11.4.1 | |||||||||
| CE27798 | |||||||||
| Other_name | CELE_C08B11.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nrf-6 | ||||||||
| DB_info | Database | AceView | gene | 2I320 | |||||
| WormQTL | gene | WBGene00003813 | |||||||
| WormFlux | gene | WBGene00003813 | |||||||
| NDB | locus_tag | CELE_C08B11.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003813|UniProtKB=Q09225 | |||||||
| family | PTHR11161 | ||||||||
| NCBI | gene | 174287 | |||||||
| RefSeq | protein | NM_063279.6 | |||||||
| SwissProt | UniProtAcc | Q09225 | |||||||
| UniProt_GCRP | UniProtAcc | Q09225 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nrf | ||||||||
| Allele (54) | |||||||||
| Legacy_information | [Choy RKM] Nrf for Nose resistant to fluxoxetine, resistant to nose contraction by fluoxetine 1.0 mg/ml. Has pale eggs, accumulates yolk in psuedocoelomic space. Incompletely penetrant embryonic lethality. | ||||||||
| Strain | WBStrain00022800 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052932 | ||||||||
| 00052933 | |||||||||
| 00052934 | |||||||||
| 00052935 | |||||||||
| 00111840 | |||||||||
| Ortholog (95) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | nrf-6 encodes a protein with 12 predicted transmembrane domains that is highly similar to NDG-4 and affects embryonic viability, yolk transport, locomotion, body morphology, and affects sensitivity to fluoxetine with respect to nose-contraction response in a common pathway with ndg-4 and nrf-5; expressed in the most anterior cells of the hypodermis and in the intestine and is required in the intestine for fluoxetine-induced nose contraction and yolk transport | Paper_evidence | WBPaper00003655 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00017065 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups and lipid binding activity. Predicted to be involved in lipid transport. Predicted to be located in membrane. Expressed in hyp3; hyp5; and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C08B11.4 | |||||||
| Corresponding_CDS_history | C08B11.4:wp52 | ||||||||
| Corresponding_transcript | C08B11.4.1 | ||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf650284 | ||||||||
| WBsf223427 | |||||||||
| WBsf223428 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00081678 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00064329 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027906 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040062 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071173 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008369 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1214 | ||||||||
| Expr1014791 | |||||||||
| Expr1031794 | |||||||||
| Expr1144127 | |||||||||
| Expr2014443 | |||||||||
| Expr2032684 | |||||||||
| Drives_construct | WBCnstr00010156 | ||||||||
| WBCnstr00035853 | |||||||||
| Construct_product | WBCnstr00010156 | ||||||||
| WBCnstr00035853 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction (34) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | II | Position | 0.648743 | Error | 0.000846 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDf100 | |||||||
| mnDf97 | |||||||||
| mnDf88 | |||||||||
| mnDf108 | |||||||||
| Positive_clone | C08B11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Negative | Outside_rearr | mnDf69 | |||||||
| mnDf89 | |||||||||
| mnDf91 | |||||||||
| mnDf92 | |||||||||
| mnDf93 | |||||||||
| mnDf94 | |||||||||
| mnDf98 | |||||||||
| mnDf101 | |||||||||
| mnDf104 | |||||||||
| Negative_clone | T05H10 | ||||||||
| Mapping_data | Multi_point | 3599 | |||||||
| 3600 | |||||||||
| 3601 | |||||||||
| 5630 | |||||||||
| Pos_neg_data (13) | |||||||||
| Reference (19) | |||||||||
| Method | Gene |
