WormBase Tree Display for Gene: WBGene00003799
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| WBGene00003799 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y37E3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-13 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | Y37E3.15 | ||||||||
| Molecular_name | Y37E3.15a | ||||||||
| Y37E3.15a.1 | |||||||||
| CE26832 | |||||||||
| Y37E3.15c | |||||||||
| CE49711 | |||||||||
| Y37E3.15b | |||||||||
| Y37E3.15c.1 | |||||||||
| Other_name | CeNup93 | Person_evidence | WBPerson1780 | ||||||
| CELE_Y37E3.15 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | npp-13 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (742) | |||||||||
| Strain | WBStrain00036338 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Contained_in_operon | CEOP1995 | ||||||||
| Ortholog (44) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of nuclear pore. Involved in several processes, including organelle organization; protein import into nucleus; and regulation of cell cycle. Predicted to be located in membrane and nucleus. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Is an ortholog of human NUP93 (nucleoporin 93). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080387 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:28958) | ||||
| Molecular_info | Corresponding_CDS | Y37E3.15a | |||||||
| Y37E3.15c | |||||||||
| Corresponding_CDS_history | Y37E3.15b:wp242 | ||||||||
| Corresponding_transcript | Y37E3.15b | ||||||||
| Y37E3.15a.1 | |||||||||
| Y37E3.15c.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000896 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078418 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078404 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078298 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055931 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023607 | ||||||||
| Expr1031785 | |||||||||
| Expr1159450 | |||||||||
| Expr2014373 | |||||||||
| Expr2032614 | |||||||||
| Antibody | WBAntibody00002371 | ||||||||
| Microarray_results | 173346_at | ||||||||
| A_12_P108740 | |||||||||
| A_12_P116943 | |||||||||
| GPL13394_WBGene00003799 | |||||||||
| GPL13914_Y37E3.15 | |||||||||
| GPL14144_Y37E3.15a_1088-1147_0.857_36_C | |||||||||
| GPL14144_Y37E3.15a_1490-1549_0.869_27_B | |||||||||
| GPL14144_Y37E3.15a_1615-1674_0.895_20_A | |||||||||
| GPL19516_CGZ0044420 | |||||||||
| GPL19516_CGZ0044421 | |||||||||
| GPL21109_Y37E3.15a | |||||||||
| GPL21109_Y37E3.15b | |||||||||
| GPL3518_CE26832 | |||||||||
| GPL8304_CE_WBGene00003799_A | |||||||||
| GPL8304_CE_WBGene00003799_B | |||||||||
| GPL8673_Y37E3_15aP01092 | |||||||||
| GPL8673_Y37E3_15aP01602 | |||||||||
| GPL8673_Y37E3_15aP01785 | |||||||||
| GPL8673_Y37E3_15bP00148 | |||||||||
| GPL8673_Y37E3_15bP00702 | |||||||||
| GPL8673_Y37E3_15bP00893 | |||||||||
| GPL9450_Y37E3.15a | |||||||||
| cea2.p.20540 | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | I | Position | -11.8161 | Error | 0.100837 | |||
| Positive | Positive_clone | Y37E3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5628 | |||||||
| 5674 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
