WormBase Tree Display for Gene: WBGene00003786
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| WBGene00003786 | Evidence | Person_evidence | WBPerson2522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_V | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | npa-1 | Person_evidence | WBPerson69 | |||||
| Sequence_name | VC5.3 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_VC5.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | npa-1 | ||||||||
| DB_info | Database | AceView | gene | 5H561 | |||||
| WormQTL | gene | WBGene00003786 | |||||||
| WormFlux | gene | WBGene00003786 | |||||||
| NDB | locus_tag | CELE_VC5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003786|UniProtKB=G5EF32 | |||||||
| family | PTHR34007 | ||||||||
| NCBI | gene | 179095 | |||||||
| RefSeq | protein | NM_072394.8 | |||||||
| NM_001392540.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF351184 | |||||||
| TrEMBL | UniProtAcc | Q86S16 | |||||||
| G5EF32 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EF32 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npa | ||||||||
| Allele (84) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00020908 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | npa-1 encodes a large polyprotein precursor that is posttranslationally cleaved to multiple units of ~14.5kDa, each of which is a strong binding protein for fatty acids and retinol (Vitamin A); the lipid binding sites of NPA-1-derived peptides are unusually apolar; NPA-1-derived peptides probably are carrier proteins that enable distribution of these lipids within nematodes; NPA-1-derived peptides are also secreted by parasitic nematode species. | Paper_evidence | WBPaper00012765 | |||||
| WBPaper00012886 | |||||||||
| WBPaper00013541 | |||||||||
| WBPaper00013542 | |||||||||
| WBPaper00013544 | |||||||||
| Person_evidence | WBPerson2522 | ||||||||
| Curator_confirmed | WBPerson13481 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in PVP; RIF; head mesodermal cell; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on proteomic; microarray; and RNA-seq studies. Is affected by twenty-three chemicals including Astaxanthin; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: DVA-1 superfamily; Nematode polyprotein allergen ABA-1; and Polyprotein allergen, nematode. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | VC5.3a | |||||||
| VC5.3b | |||||||||
| Corresponding_CDS_history | VC5.3c:wp252 | ||||||||
| Corresponding_transcript | VC5.3a.1 | ||||||||
| VC5.3b.1 | |||||||||
| VC5.3b.2 | |||||||||
| VC5.3b.3 | |||||||||
| VC5.3b.4 | |||||||||
| VC5.3b.5 | |||||||||
| VC5.3b.6 | |||||||||
| VC5.3b.7 | |||||||||
| VC5.3b.8 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf646916 | ||||||||
| WBsf646917 | |||||||||
| WBsf661404 | |||||||||
| WBsf231936 | |||||||||
| WBsf231937 | |||||||||
| WBsf231938 | |||||||||
| WBsf231939 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019428 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062987 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019430 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036113 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066153 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054460 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022717 | ||||||||
| Expr1031772 | |||||||||
| Expr1158007 | |||||||||
| Expr2014360 | |||||||||
| Expr2032601 | |||||||||
| Drives_construct | WBCnstr00006002 | ||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (271) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | V | Position | 0.523787 | Error | 0.009045 | |||
| Positive | Positive_clone | VC5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029254 | ||||||||
| WBPaper00057988 | |||||||||
| WBPaper00065026 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
