WormBase Tree Display for Gene: WBGene00003687
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| WBGene00003687 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-97 | Person_evidence | WBPerson600 | |||||
| Sequence_name | H27C11.1 | ||||||||
| Molecular_name | H27C11.1a | ||||||||
| H27C11.1a.1 | |||||||||
| CE31027 | |||||||||
| H27C11.1b | |||||||||
| CE39262 | |||||||||
| H27C11.1a.2 | |||||||||
| H27C11.1b.1 | |||||||||
| H27C11.1b.2 | |||||||||
| Other_name | CELE_H27C11.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-97 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003687 | |||||
| WormFlux | gene | WBGene00003687 | |||||||
| NDB | locus_tag | CELE_H27C11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003687|UniProtKB=Q9BJK5 | |||||||
| family | PTHR47519 | ||||||||
| NCBI | gene | 177810 | |||||||
| RefSeq | protein | NM_001392373.1 | |||||||
| NM_001047489.5 | |||||||||
| SwissProt | UniProtAcc | Q9BJK5 | |||||||
| TREEFAM | TREEFAM_ID | TF315278 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BJK5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (68) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091534 | ||||||||
| 00091535 | |||||||||
| 00091536 | |||||||||
| 00091537 | |||||||||
| 00111545 | |||||||||
| 00111546 | |||||||||
| 00111547 | |||||||||
| 00111548 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H27C11.1a | |||||||
| H27C11.1b | |||||||||
| Corresponding_CDS_history | H27C11.1:wp80 | ||||||||
| Corresponding_transcript | H27C11.1a.1 | ||||||||
| H27C11.1a.2 | |||||||||
| H27C11.1b.1 | |||||||||
| H27C11.1b.2 | |||||||||
| Other_sequence | HG10379 | ||||||||
| CBC13154_1 | |||||||||
| CGC00782_1 | |||||||||
| BUC00409_1 | |||||||||
| BXC03820_1 | |||||||||
| HGC09044_1 | |||||||||
| CR05992 | |||||||||
| CGC00625_1 | |||||||||
| CRC01413_1 | |||||||||
| Associated_feature | WBsf655047 | ||||||||
| WBsf660521 | |||||||||
| WBsf716787 | |||||||||
| WBsf978783 | |||||||||
| WBsf997472 | |||||||||
| WBsf1017997 | |||||||||
| Transcription_factor | WBTranscriptionFactor000458 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00049500 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115819 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092861 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033757 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024195 | ||||||||
| Expr1031715 | |||||||||
| Expr1153222 | |||||||||
| Expr2014249 | |||||||||
| Expr2032490 | |||||||||
| Drives_construct | WBCnstr00035946 | ||||||||
| Construct_product | WBCnstr00035946 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (139) | |||||||||
| Interaction | WBInteraction000258961 | ||||||||
| WBInteraction000543031 | |||||||||
| Map_info | Map | IV | Position | 4.40086 | Error | 0.000949 | |||
| Positive | Positive_clone | H27C11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4175 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00041549 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
