WormBase Tree Display for Gene: WBGene00003679

WBGene00003679 Evidence: Paper_evidence: WBPaper00003754
  SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: nhr-89 Person_evidence: WBPerson573
      Sequence_name: E03H4.13
      Molecular_name: E03H4.13
        E03H4.13.1
        CE09139
      Other_name: CELE_E03H4.13 Accession_evidence: NDB BX284601
      Public_name: nhr-89
    DB_info: Database: AceView gene 1N28
        WormQTL gene WBGene00003679
        WormFlux gene WBGene00003679
        NDB locus_tag CELE_E03H4.13
        Panther gene CAEEL|WormBase=WBGene00003679|UniProtKB=O02235
          family PTHR46397
        NCBI gene 184026
        RefSeq protein NM_060754.4
        SwissProt UniProtAcc O02235
        TREEFAM TREEFAM_ID TF321941
        UniProt_GCRP UniProtAcc O02235
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Laboratory: PY
    Allele (61)
    RNASeq_FPKM (74)
    GO_annotation: 00026862
      00026863
      00026864
      00026865
      00111513
      00111514
      00111515
      00111516
    Ortholog: WBGene00162925 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00062097 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00034413 Caenorhabditis briggsae From_analysis: WormBase-Compara
      Csp5_scaffold_00371.g10309 Caenorhabditis sinica From_analysis: WormBase-Compara
      Pan_g1318 Panagrellus redivivus From_analysis: WormBase-Compara
      chrI_pilon.g2500 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00301869 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301928 Trichuris muris From_analysis: WormBase-Compara
    Paralog (43)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in seam cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: E03H4.13
    Corresponding_transcript: E03H4.13.1
    Associated_feature: WBsf220430
    Transcription_factor: WBTranscriptionFactor000285
  Experimental_info: RNAi_result: WBRNAi00115764 Inferred_automatically: RNAi_primary
      WBRNAi00043652 Inferred_automatically: RNAi_primary
      WBRNAi00003315 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1178
      Expr1012484
      Expr1147637
      Expr2014240
      Expr2032481
    Drives_construct: WBCnstr00010129
      WBCnstr00035952
    Construct_product: WBCnstr00010129
      WBCnstr00035952
    Microarray_results (14)
    Expression_cluster (27)
    Interaction (55)
  Map_info: Map: I Position: 13.2037 Error: 0.003918
    Positive: Positive_clone: E03H4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5326
        5396
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: Sequence connection from [Sluder AE], [020814 krb]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene