WormBase Tree Display for Gene: WBGene00003663
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| WBGene00003663 | Evidence | Paper_evidence | WBPaper00003754 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C27C7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-73 | Person_evidence | WBPerson573 | |||||
| Sequence_name | C27C7.4 | ||||||||
| Molecular_name | C27C7.4 | ||||||||
| C27C7.4.1 | |||||||||
| CE19336 | |||||||||
| Other_name | CELE_C27C7.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nhr-73 | ||||||||
| DB_info | Database | AceView | gene | 1M22 | |||||
| WormQTL | gene | WBGene00003663 | |||||||
| WormFlux | gene | WBGene00003663 | |||||||
| NDB | locus_tag | CELE_C27C7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003663|UniProtKB=G5EGP2 | |||||||
| family | PTHR46397 | ||||||||
| NCBI | gene | 191722 | |||||||
| RefSeq | protein | NM_060520.5 | |||||||
| TREEFAM | TREEFAM_ID | TF321941 | |||||||
| TrEMBL | UniProtAcc | G5EGP2 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGP2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Laboratory | PY | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00020606 | ||||||||
| 00020607 | |||||||||
| 00020608 | |||||||||
| 00111461 | |||||||||
| 00111462 | |||||||||
| 00111463 | |||||||||
| 00111464 | |||||||||
| Ortholog (20) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Concise_description | nhr-73 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; expression studies using GFP fusions indicate that nhr-73 is expressed exclusively in lateral seam cells; expression of nhr-73 is seen in early embryonic lateral hypodermal cells and continues to persist in the daughter cell that continues to divide and is lost in the daughter cell that differentiates; nhr-73 expression is diminished by knocking down genes (via RNA interference) that are involved in seam cell development like elt-5 and ceh-16/engrailed. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00003754 | |||||||||
| WBPaper00004833 | |||||||||
| WBPaper00024903 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C27C7.4 | |||||||
| Corresponding_CDS_history | C27C7.4:wp177 | ||||||||
| Corresponding_transcript | C27C7.4.1 | ||||||||
| Associated_feature | WBsf985284 | ||||||||
| WBsf985285 | |||||||||
| WBsf1010713 | |||||||||
| WBsf220338 | |||||||||
| WBsf220339 | |||||||||
| Transcription_factor | WBTranscriptionFactor000296 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029270 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041335 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041336 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1172 | ||||||||
| Expr7450 | |||||||||
| Expr1013394 | |||||||||
| Expr1145376 | |||||||||
| Expr2014225 | |||||||||
| Expr2032466 | |||||||||
| Drives_construct | WBCnstr00010123 | ||||||||
| WBCnstr00012594 | |||||||||
| WBCnstr00035961 | |||||||||
| Construct_product | WBCnstr00010123 | ||||||||
| WBCnstr00035961 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (72) | |||||||||
| Map_info | Map | I | Position | 8.60555 | Error | 0.084798 | |||
| Positive | Positive_clone | C27C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5386 | |||||||
| 5393 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024393 | ||||||||
| WBPaper00024903 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00061387 | |||||||||
| WBPaper00061466 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
