WormBase Tree Display for Gene: WBGene00003633
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| WBGene00003633 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C29E6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-43 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C29E6.5 | ||||||||
| Molecular_name | C29E6.5a | ||||||||
| C29E6.5a.1 | |||||||||
| CE05336 | |||||||||
| C29E6.5b | |||||||||
| CE49855 | |||||||||
| C29E6.5b.1 | |||||||||
| Other_name | CELE_C29E6.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-43 | ||||||||
| DB_info | Database | AceView | gene | 4M667 | |||||
| WormQTL | gene | WBGene00003633 | |||||||
| SignaLink | protein | WBGene00003633 | |||||||
| WormFlux | gene | WBGene00003633 | |||||||
| NDB | locus_tag | CELE_C29E6.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003633|UniProtKB=Q18299 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 178121 | |||||||
| RefSeq | protein | NM_001307047.3 | |||||||
| NM_069853.6 | |||||||||
| SwissProt | UniProtAcc | Q18299 | |||||||
| UniProt_GCRP | UniProtAcc | Q18299 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00030104 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (32) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-43 is predicted to encode a nuclear hormone receptor (NHR); the primary sequence of nhr-43 reveals that it has a leucine instead of a methionine that is conserved within the NHR superfamily at the carboxyl boundary of the DNA-binding domain. | Paper_evidence | WBPaper00003416 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 14 Jul 2005 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dorsal nerve cord; excretory cell; head neurons; hypodermis; and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29E6.5a | |||||||
| C29E6.5b | |||||||||
| Corresponding_transcript | C29E6.5a.1 | ||||||||
| C29E6.5b.1 | |||||||||
| Other_sequence | RSC00887_1 | ||||||||
| Dviv_isotig33556 | |||||||||
| RS08978 | |||||||||
| Associated_feature | WBsf646430 | ||||||||
| WBsf646431 | |||||||||
| WBsf660770 | |||||||||
| WBsf978460 | |||||||||
| WBsf997990 | |||||||||
| WBsf997991 | |||||||||
| WBsf1018296 | |||||||||
| WBsf1018297 | |||||||||
| WBsf229217 | |||||||||
| Transcription_factor | WBTranscriptionFactor000479 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041459 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029315 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3944 | ||||||||
| Expr7454 | |||||||||
| Expr1017559 | |||||||||
| Expr1031677 | |||||||||
| Expr1145488 | |||||||||
| Expr1200356 | |||||||||
| Expr2014192 | |||||||||
| Expr2032433 | |||||||||
| Drives_construct | WBCnstr00011768 | ||||||||
| WBCnstr00012598 | |||||||||
| WBCnstr00035983 | |||||||||
| Construct_product | WBCnstr00035983 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | IV | Position | 5.37941 | Error | 0.00626 | |||
| Positive | Positive_clone | C29E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4854 | |||||||
| 4821 | |||||||||
| 4302 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00034547 | |||||||||
| WBPaper00039702 | |||||||||
| WBPaper00045320 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
