WormBase Tree Display for Gene: WBGene00003603
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| WBGene00003603 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F32B6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-4 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F32B6.1 | ||||||||
| Molecular_name | F32B6.1 | ||||||||
| F32B6.1.1 | |||||||||
| CE24934 | |||||||||
| Other_name | CELE_F32B6.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-4 | ||||||||
| DB_info | Database | AceView | gene | 4K645 | |||||
| WormQTL | gene | WBGene00003603 | |||||||
| WormFlux | gene | WBGene00003603 | |||||||
| NDB | locus_tag | CELE_F32B6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003603|UniProtKB=O45436 | |||||||
| family | PTHR47630 | ||||||||
| NCBI | gene | 177839 | |||||||
| RefSeq | protein | NM_069374.11 | |||||||
| SwissProt | UniProtAcc | O45436 | |||||||
| TREEFAM | TREEFAM_ID | TF315528 | |||||||
| UniProt_GCRP | UniProtAcc | O45436 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (32) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. Cosmid ZZH8 [AE] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034514 | ||||||||
| 00034515 | |||||||||
| 00034516 | |||||||||
| 00034517 | |||||||||
| 00111214 | |||||||||
| 00111215 | |||||||||
| 00111216 | |||||||||
| 00111217 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | nhr-4 is predicted to encode a nuclear hormone receptor (NHR); expression may peak during the late larval stages, based on mRNA expression analysis. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00012651 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 14 Jul 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine; neurons; pharynx; and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32B6.1 | |||||||
| Corresponding_transcript | F32B6.1.1 | ||||||||
| Other_sequence | AF083223 | ||||||||
| Dviv_isotig00046 | |||||||||
| Oden_isotig19183 | |||||||||
| HBC17808_1 | |||||||||
| EX010038.1 | |||||||||
| Dviv_isotig00044 | |||||||||
| Hbac_isotig04554 | |||||||||
| Dviv_isotig00045 | |||||||||
| Tcir_isotig29936 | |||||||||
| CBC06120_1 | |||||||||
| Associated_feature (11) | |||||||||
| Transcription_factor | WBTranscriptionFactor000304 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00014201 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027855 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046110 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115821 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094997 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00002707 | ||||||||
| WBCnstr00012040 | |||||||||
| WBCnstr00012041 | |||||||||
| WBCnstr00036009 | |||||||||
| Construct_product | WBCnstr00036009 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction | WBInteraction000029694 | ||||||||
| WBInteraction000031338 | |||||||||
| WBInteraction000031339 | |||||||||
| WBInteraction000134076 | |||||||||
| WBInteraction000135583 | |||||||||
| WBInteraction000164031 | |||||||||
| WBInteraction000254699 | |||||||||
| WBInteraction000384293 | |||||||||
| WBInteraction000434756 | |||||||||
| WBInteraction000505306 | |||||||||
| WBInteraction000511497 | |||||||||
| WBInteraction000513753 | |||||||||
| WBInteraction000513766 | |||||||||
| WBInteraction000513770 | |||||||||
| WBInteraction000516312 | |||||||||
| WBInteraction000516320 | |||||||||
| WBInteraction000516536 | |||||||||
| WBInteraction000526916 | |||||||||
| WBInteraction000526917 | |||||||||
| WBInteraction000526918 | |||||||||
| WBInteraction000526919 | |||||||||
| WBInteraction000526920 | |||||||||
| WBInteraction000526921 | |||||||||
| WBInteraction000526922 | |||||||||
| WBInteraction000528302 | |||||||||
| WBInteraction000529800 | |||||||||
| WBInteraction000529837 | |||||||||
| WBInteraction000529914 | |||||||||
| WBInteraction000531354 | |||||||||
| WBInteraction000532753 | |||||||||
| WBInteraction000533829 | |||||||||
| Map_info | Map | IV | Position | 4.43619 | Error | 0.000369 | |||
| Positive | Positive_clone | F32B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| F49C8 | Person_evidence | WBPerson600 | |||||||
| Y37F11 | Person_evidence | WBPerson600 | |||||||
| Y39E2 | Person_evidence | WBPerson600 | |||||||
| Y43F7 | Person_evidence | WBPerson600 | |||||||
| Y49F10 | Person_evidence | WBPerson600 | |||||||
| ZK1264 | Person_evidence | WBPerson600 | |||||||
| ZZH8 | Person_evidence | WBPerson600 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003416 | ||||||||
| WBPaper00012651 | |||||||||
| WBPaper00027076 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00030829 | |||||||||
| WBPaper00063946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
