WormBase Tree Display for Gene: WBGene00003602
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| WBGene00003602 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H01A20 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-3 | Person_evidence | WBPerson600 | |||||
| Sequence_name | H01A20.1 | ||||||||
| Molecular_name | H01A20.1 | ||||||||
| H01A20.1.1 | |||||||||
| CE18798 | |||||||||
| Other_name | CELE_H01A20.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhr-3 | ||||||||
| DB_info | Database | AceView | gene | XP179 | |||||
| WormQTL | gene | WBGene00003602 | |||||||
| WormFlux | gene | WBGene00003602 | |||||||
| NDB | locus_tag | CELE_H01A20.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003602|UniProtKB=Q9XTJ4 | |||||||
| family | PTHR24086 | ||||||||
| NCBI | gene | 181551 | |||||||
| RefSeq | protein | NM_078022.7 | |||||||
| SwissProt | UniProtAcc | Q9XTJ4 | |||||||
| TREEFAM | TREEFAM_ID | TF315723 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XTJ4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (52) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y52F5 etc. [AE] | |||||||||
| Strain | WBStrain00031765 | ||||||||
| WBStrain00035820 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (27) | |||||||||
| Paralog (219) | |||||||||
| Structured_description | Concise_description | nhr-3 encodes a member of the superfamily of nuclear receptors which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; nhr-3 has been identified and characterised as a gene affected by ethanol exposure in a microarray analysis of all C. elegans ORFs. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00006412 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 16 Nov 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in hormone-mediated signaling pathway; regulation of transcription by RNA polymerase II; and tissue development. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Expressed in head neurons; hypodermis; muscle cell; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H01A20.1 | |||||||
| Corresponding_transcript | H01A20.1.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature (20) | |||||||||
| Transcription_factor | WBTranscriptionFactor000358 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00016157 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033638 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7596 | ||||||||
| Expr7964 | |||||||||
| Expr1019816 | |||||||||
| Expr1031651 | |||||||||
| Expr1152994 | |||||||||
| Expr2014188 | |||||||||
| Expr2032429 | |||||||||
| Drives_construct | WBCnstr00012741 | ||||||||
| WBCnstr00013028 | |||||||||
| WBCnstr00036010 | |||||||||
| Construct_product | WBCnstr00036010 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (223) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | X | Position | 16.7469 | Error | 0.003853 | |||
| Positive | Positive_clone | H01A20 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y43C6 | Person_evidence | WBPerson600 | |||||||
| Y52C11 | Person_evidence | WBPerson600 | |||||||
| Y52F5 | Person_evidence | WBPerson600 | |||||||
| Mapping_data | Multi_point | 4518 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003416 | ||||||||
| WBPaper00006465 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00031532 | |||||||||
| Remark | Sluder et al., 1999 [021217 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
