WormBase Tree Display for Gene: WBGene00003580
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| WBGene00003580 | SMap | S_parent | Sequence | Y38A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ndx-3 | Person_evidence | WBPerson3090 | |||||
| Sequence_name | Y38A8.1 | ||||||||
| Molecular_name | Y38A8.1 | ||||||||
| Y38A8.1.1 | |||||||||
| CE45628 | |||||||||
| Other_name | CELE_Y38A8.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ndx-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ndx | ||||||||
| Allele (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077694 | ||||||||
| 00077695 | |||||||||
| 00111174 | |||||||||
| Contained_in_operon | CEOP2690 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00044260 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00003585 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The ndx-3 gene encodes a homolog of peroxisomal CoA diphosphatases in both S. cerevisiae (PCD1) and C. elegans (NDX-8); more generally, NDX-3 protein belongs to the family of NUDIX hydrolases. | Paper_evidence | WBPaper00004210 | |||||
| WBPaper00005401 | |||||||||
| WBPaper00012820 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable CoA pyrophosphatase activity and metal ion binding activity. Is an ortholog of human NUDT8 (nudix hydrolase 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38A8.1 | |||||||
| Corresponding_CDS_history | Y38A8.1:wp222 | ||||||||
| Corresponding_transcript | Y38A8.1.1 | ||||||||
| Other_sequence | FD517727.1 | ||||||||
| Oden_isotig08705 | |||||||||
| BUC01764_1 | |||||||||
| Dviv_isotig23936 | |||||||||
| CSC01885_1 | |||||||||
| Oden_isotig08703 | |||||||||
| Oden_isotig08706 | |||||||||
| Oden_isotig08704 | |||||||||
| Associated_feature | WBsf221209 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00020249 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055976 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036822 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023829 | ||||||||
| Expr1031632 | |||||||||
| Expr1159495 | |||||||||
| Expr2013944 | |||||||||
| Expr2032183 | |||||||||
| Drives_construct | WBCnstr00036027 | ||||||||
| Construct_product | WBCnstr00036027 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | II | Position | -2.62727 | Error | 0.003366 | |||
| Positive | Positive_clone | Y38A8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005401 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
