WormBase Tree Display for Gene: WBGene00003460
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| WBGene00003460 | SMap | S_parent | Sequence | F59A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-71 | Person_evidence | WBPerson680 | |||||
| Sequence_name | F59A6.8 | ||||||||
| Molecular_name | F59A6.8 | ||||||||
| Other_name | msp-71ps | ||||||||
| CELE_F59A6.8 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | msp-71 | ||||||||
| DB_info | Database | AceView | gene | 2F302 | |||||
| NDB | locus_tag | CELE_F59A6.8 | |||||||
| NCBI | gene | 13184817 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0000336 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01239737 | |||||||||
| WBVar00729485 | |||||||||
| WBVar00729486 | |||||||||
| WBVar01498435 | |||||||||
| WBVar01538159 | |||||||||
| WBVar00365290 | |||||||||
| WBVar01498761 | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); near msp-152. [Ward et al. (1988); BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Paralog | WBGene00022760 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Concise_description | msp-71 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
| WBPaper00002143 | |||||||||
| WBPaper00004591 | |||||||||
| WBPaper00005670 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
| Automated_description | Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_pseudogene | F59A6.8 | |||||||
| Other_sequence | BUC01050_1 | ||||||||
| CR00872 | |||||||||
| CR11480 | |||||||||
| Experimental_info | Expr_pattern | Expr3417 | |||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | GPL19516_CGZ0025478 | ||||||||
| GPL19516_CGZ0032235 | |||||||||
| GPL19516_CGZ0051387 | |||||||||
| GPL21109_F59A6.8 | |||||||||
| GPL21109_R13H9.4 | |||||||||
| GPL21109_Y59H11AM.1 | |||||||||
| Expression_cluster (68) | |||||||||
| Map_info | Map | II | Position | -2.59653 | Error | 0.001633 | |||
| Positive | Positive_clone | C51A9 | |||||||
| F59A6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001023 | ||||||||
| WBPaper00001024 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
