WormBase Tree Display for Gene: WBGene00003434
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| WBGene00003434 | SMap | S_parent | Sequence | K08F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | msp-38 | Person_evidence | WBPerson680 | |||||
| Sequence_name | K08F4.8 | ||||||||
| Molecular_name | K08F4.8 | ||||||||
| K08F4.8.1 | |||||||||
| CE06156 | |||||||||
| Other_name | CELE_K08F4.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | msp-38 | ||||||||
| DB_info | Database | AceView | gene | 4K908 | |||||
| WormQTL | gene | WBGene00003434 | |||||||
| WormFlux | gene | WBGene00003434 | |||||||
| NDB | locus_tag | CELE_K08F4.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003434|UniProtKB=P53020 | |||||||
| family | PTHR22920 | ||||||||
| NCBI | gene | 177887 | |||||||
| RefSeq | protein | NM_069448.10 | |||||||
| SwissProt | UniProtAcc | P53020 | |||||||
| UniProt_GCRP | UniProtAcc | P53020 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | msp | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar00091644 | |||||||||
| WBVar00433523 | |||||||||
| WBVar00936008 | |||||||||
| WBVar00093509 | |||||||||
| WBVar00936009 | |||||||||
| WBVar00936010 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-77 cluster. [Ward et al. (1988); BA] | ||||||||
| Strain | WBStrain00031388 | ||||||||
| WBStrain00032514 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047999 | ||||||||
| 00048000 | |||||||||
| 00048001 | |||||||||
| 00048002 | |||||||||
| 00048003 | |||||||||
| 00048004 | |||||||||
| 00048005 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (50) | |||||||||
| Structured_description | Concise_description | msp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA). | Paper_evidence | WBPaper00004280 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 06 May 2005 00:00:00 | ||||||||
| Automated_description | Involved in oocyte maturation and positive regulation of smooth muscle contraction. Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K08F4.8 | |||||||
| Corresponding_transcript | K08F4.8.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf997561 | ||||||||
| WBsf1018052 | |||||||||
| WBsf230680 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr3417 | ||||||||
| Expr1025688 | |||||||||
| Expr1154027 | |||||||||
| Expr2032013 | |||||||||
| Drives_construct | WBCnstr00036119 | ||||||||
| Construct_product | WBCnstr00036119 | ||||||||
| Antibody | WBAntibody00000037 | ||||||||
| WBAntibody00000038 | |||||||||
| WBAntibody00000854 | |||||||||
| WBAntibody00000855 | |||||||||
| WBAntibody00000856 | |||||||||
| WBAntibody00000857 | |||||||||
| WBAntibody00000858 | |||||||||
| Microarray_results | SMD_K08F4.8 | ||||||||
| A_12_P120059 | |||||||||
| Aff_K08F4.8 | |||||||||
| GPL19516_CGZ0028623 | |||||||||
| GPL21109_K08F4.8 | |||||||||
| GPL3518_CE06156 | |||||||||
| GPL8304_CE_WBGene00003434_C | |||||||||
| GPL8673_K08F4_8P00023 | |||||||||
| GPL8673_K08F4_8P00049 | |||||||||
| Expression_cluster (208) | |||||||||
| Interaction | WBInteraction000222706 | ||||||||
| WBInteraction000305909 | |||||||||
| WBInteraction000330005 | |||||||||
| WBInteraction000380662 | |||||||||
| WBInteraction000424899 | |||||||||
| WBInteraction000429884 | |||||||||
| WBInteraction000439935 | |||||||||
| WBInteraction000440809 | |||||||||
| WBInteraction000557902 | |||||||||
| WBInteraction000580176 | |||||||||
| Map_info | Map | IV | Position | 4.53898 | Error | 0.000934 | |||
| Positive | Positive_clone | K08F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4498 | |||||||
| 4743 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (7) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
