WormBase Tree Display for Gene: WBGene00003354
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| WBGene00003354 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F39E9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-260 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F39E9.13 | ||||||||
| Molecular_name | F39E9.13 | ||||||||
| F39E9.13b | |||||||||
| Other_name | cel-mir-260 | Remark | miRBase V21 import | ||||||
| CELE_F39E9.13 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-260 | ||||||||
| DB_info | Database | miRBase | acc | MI0000337 | |||||
| NDB | locus_tag | CELE_F39E9.13 | |||||||
| NCBI | gene | 3565724 | |||||||
| RefSeq | protein | NR_002360.2 | |||||||
| RNAcentral | URSid | URS00003DEC7E | |||||||
| URS00005424BD | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00027496 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-260 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-260 is primarily embryonic in expression; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-260 is unknown. | Paper_evidence | WBPaper00005879 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including tph-1; glp-4; and cat-2 based on RNA-seq studies. Is affected by multi-walled carbon nanotube; nicotine; and sodium arsenite based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F39E9.13 | |||||||
| F39E9.13b | |||||||||
| Associated_feature | WBsf987203 | ||||||||
| WBsf987204 | |||||||||
| WBsf987205 | |||||||||
| WBsf987206 | |||||||||
| WBsf987207 | |||||||||
| WBsf987208 | |||||||||
| WBsf1011873 | |||||||||
| WBsf1011874 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046780 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014606 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10967 | ||||||||
| Expression_cluster (17) | |||||||||
| Map_info | Map | II | Position | -6.75387 | Error | 0.020123 | |||
| Positive | Positive_clone | F39E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005879 | ||||||||
| WBPaper00031335 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| The annotation of cel-mir-260 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | |||||||||
| Method | Gene |
