WormBase Tree Display for Gene: WBGene00003335
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WBGene00003335 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F56A12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-241 | Person_evidence | WBPerson18 | |||||
Sequence_name | F56A12.4 | ||||||||
Molecular_name | F56A12.4 | ||||||||
F56A12.4a | |||||||||
F56A12.4b | |||||||||
Other_name | cel-mir-241 | Remark | miRBase V21 import | ||||||
Cel-Let-7-P8 | Remark | MirGeneDB 2.1 import | |||||||
CELE_F56A12.4 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | mir-241 | ||||||||
DB_info | Database | miRBase | acc | MI0000317 | |||||
SignaLink | mirna | cel-mir-241 | |||||||
MirGeneDB | cel | Cel-Let-7-P8 | |||||||
NDB | locus_tag | CELE_F56A12.4 | |||||||
NCBI | gene | 3565950 | |||||||
RefSeq | protein | NR_002403.2 | |||||||
RNAcentral | URSid | URS00002BFC83 | |||||||
URS000040AE62 | |||||||||
URS000040F239 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele (11) | |||||||||
Strain | WBStrain00027442 | ||||||||
WBStrain00027449 | |||||||||
WBStrain00027441 | |||||||||
WBStrain00040223 | |||||||||
WBStrain00040225 | |||||||||
WBStrain00040228 | |||||||||
WBStrain00051617 | |||||||||
In_cluster | LET-7 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00106260 | ||||||||
00106261 | |||||||||
Structured_description | Concise_description | mir-241 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; based on RNA sequence identity, miR-241 belongs to the let-7 family of microRNAs along with C. elegans miR-48 and miR-84 and human let-7, miR-196-1 and miR-196-2; mir-241 acts redundantly with miR-48 and mir-84 to control L2 to L3 larval and larval to adult stage transitions; miR-241 is strongly expressed from the L3 larval stage into the adult stage in normal worms and in glp-4(bn2) mutant worms. | Paper_evidence | WBPaper00005825 | |||||
WBPaper00010853 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
Automated_description | Involved in miRNA-mediated gene silencing by inhibition of translation and positive regulation of development, heterochronic. Expressed in body wall musculature; excretory canal; hermaphrodite distal tip cell; and touch receptor neurons. Used to study Parkinson's disease. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00035654 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
Disease_relevance | mir-241 is a small non-protein coding RNA that belongs to the let-7 family; microRNA expression profiling studies indicate that mir-241 is overexpressed in an elegans Parkinson''s disease model, the pdr-1 mutant (pdr-1 is orthologous to human PARKIN). | Homo sapiens | Paper_evidence | WBPaper00035654 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00000268 | ||||||||
Molecular_info | Corresponding_transcript | F56A12.4 | |||||||
F56A12.4a | |||||||||
F56A12.4b | |||||||||
Associated_feature | WBsf034325 | ||||||||
WBsf979128 | |||||||||
WBsf1001991 | |||||||||
WBsf1001992 | |||||||||
WBsf1001993 | |||||||||
WBsf1001994 | |||||||||
WBsf1020828 | |||||||||
WBsf1020829 | |||||||||
WBsf1020830 | |||||||||
WBsf1020831 | |||||||||
Experimental_info | Expr_pattern (11) | ||||||||
Drives_construct | WBCnstr00005522 | ||||||||
WBCnstr00011651 | |||||||||
WBCnstr00015774 | |||||||||
WBCnstr00015775 | |||||||||
WBCnstr00017833 | |||||||||
Construct_product | WBCnstr00015775 | ||||||||
Expression_cluster (38) | |||||||||
Interaction (17) | |||||||||
WBProcess | WBbiopr:00000083 | ||||||||
Map_info | Map | V | Position | 6.27847 | Error | 0.001234 | |||
Positive | Inside_rearr | nDf51 | |||||||
Positive_clone | F56A12 | Inferred_automatically | From CDS info | ||||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5653 | |||||||
Pos_neg_data | 10750 | ||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005825 | ||||||||
WBPaper00006075 | |||||||||
WBPaper00010853 | |||||||||
WBPaper00019714 | |||||||||
WBPaper00025627 | |||||||||
WBPaper00026043 | |||||||||
WBPaper00026424 | |||||||||
WBPaper00026716 | |||||||||
WBPaper00026780 | |||||||||
WBPaper00026781 | |||||||||
WBPaper00026854 | |||||||||
WBPaper00027282 | |||||||||
WBPaper00030565 | |||||||||
WBPaper00031335 | |||||||||
WBPaper00031783 | |||||||||
WBPaper00032187 | |||||||||
WBPaper00032188 | |||||||||
WBPaper00032329 | |||||||||
WBPaper00032617 | |||||||||
WBPaper00032670 | |||||||||
WBPaper00032974 | |||||||||
WBPaper00033044 | |||||||||
WBPaper00034321 | |||||||||
WBPaper00034339 | |||||||||
WBPaper00034907 | |||||||||
WBPaper00035307 | |||||||||
WBPaper00035664 | |||||||||
WBPaper00036027 | |||||||||
WBPaper00036657 | |||||||||
WBPaper00038300 | |||||||||
WBPaper00039005 | |||||||||
WBPaper00039546 | |||||||||
WBPaper00040016 | |||||||||
WBPaper00041805 | |||||||||
WBPaper00042343 | |||||||||
WBPaper00043012 | |||||||||
WBPaper00043069 | |||||||||
WBPaper00043713 | |||||||||
WBPaper00043840 | |||||||||
WBPaper00043989 | |||||||||
WBPaper00045070 | |||||||||
WBPaper00046619 | |||||||||
WBPaper00048181 | |||||||||
WBPaper00049569 | |||||||||
WBPaper00050411 | |||||||||
WBPaper00052242 | |||||||||
WBPaper00052450 | |||||||||
WBPaper00052460 | |||||||||
WBPaper00054726 | |||||||||
WBPaper00056761 | |||||||||
WBPaper00058225 | |||||||||
WBPaper00058226 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |