WormBase Tree Display for Gene: WBGene00003322
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| WBGene00003322 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00005825 | |||||||||
| SMap | S_parent | Sequence | Y48G9A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-229 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y48G9A.16 | ||||||||
| Molecular_name | Y48G9A.16 | ||||||||
| Y48G9A.16a | |||||||||
| Y48G9A.16b | |||||||||
| Other_name | cel-mir-229 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_Y48G9A.16 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | mir-229 | ||||||||
| DB_info | Database | miRBase | acc | MI0000304 | |||||
| SignaLink | mirna | cel-mir-229 | |||||||
| MirGeneDB | cel | Cel-Mir-229 | |||||||
| NDB | locus_tag | CELE_Y48G9A.16 | |||||||
| NCBI | gene | 3565322 | |||||||
| RefSeq | protein | NR_002378.2 | |||||||
| RNAcentral | URSid | URS000010A74A | |||||||
| URS0000347558 | |||||||||
| URS0000466DE6 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01500082 | ||||||||
| WBVar01496604 | |||||||||
| WBVar01498832 | |||||||||
| WBVar00090954 | |||||||||
| WBVar00323160 | |||||||||
| WBVar00323169 | |||||||||
| WBVar00391454 | |||||||||
| WBVar02151754 | |||||||||
| Strain | WBStrain00027559 | ||||||||
| In_cluster | MIR-229 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-229 encodes a microRNA, a small non-protein coding RNA; miR-229 is strongly expressed at all stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-229 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| WBPaper00005879 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including eat-2; alg-1; and alg-2 based on RNA-seq studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y48G9A.16 | |||||||
| Y48G9A.16a | |||||||||
| Y48G9A.16b | |||||||||
| Experimental_info | Expr_pattern | Expr2505 | |||||||
| Expr2649 | |||||||||
| Expr10914 | |||||||||
| Regulate_expr_cluster | WBPaper00064999:miR-229-64-65-66_downregulated | ||||||||
| WBPaper00064999:miR-229-64-65-66_upregulated | |||||||||
| Expression_cluster (23) | |||||||||
| Interaction | WBInteraction000009105 | ||||||||
| WBInteraction000536195 | |||||||||
| WBInteraction000536196 | |||||||||
| WBInteraction000536197 | |||||||||
| WBInteraction000536202 | |||||||||
| WBInteraction000536203 | |||||||||
| WBInteraction000536193 | |||||||||
| Map_info | Positive | Inside_rearr | nDf52 | ||||||
| nDf63 | |||||||||
| Positive_clone | Y48G9A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Pos_neg_data | 10922 | |||||||
| 10940 | |||||||||
| Interpolated_map_position | III | -15.0644 | |||||||
| Reference (11) | |||||||||
| Method | Gene |
