WormBase Tree Display for Gene: WBGene00003282
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| WBGene00003282 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F09A5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-54 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F09A5.5 | ||||||||
| Molecular_name | F09A5.5 | ||||||||
| F09A5.5a | |||||||||
| F09A5.5b | |||||||||
| Other_name | cel-mir-54 | Remark | miRBase V21 import | ||||||
| Cel-Mir-54-P1 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F09A5.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-54 | ||||||||
| DB_info | Database | miRBase | acc | MI0000025 | |||||
| SignaLink | mirna | cel-mir-54 | |||||||
| MirGeneDB | cel | Cel-Mir-54-P1 | |||||||
| NDB | locus_tag | CELE_F09A5.5 | |||||||
| NCBI | gene | 259895 | |||||||
| RefSeq | protein | NR_001263.2 | |||||||
| RNAcentral | URSid | URS00001D3EF3 | |||||||
| URS000028E50A | |||||||||
| URS000043FDBE | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499519 | |||||||||
| WBVar01499888 | |||||||||
| WBVar02151615 | |||||||||
| WBVar01499710 | |||||||||
| WBVar00323164 | |||||||||
| WBVar00521182 | |||||||||
| WBVar01199484 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00027486 | ||||||||
| In_cluster | MIR-54 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-54 encodes a microRNA that belongs to a large group of microRNAs that include the stRNAs, lin-4 and let-7; this group of microRNAs is probably involved in posttranscriptional regulation of genes involved in development; mir-54 is expressed at all life stages. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 Oct 2004 00:00:00 | ||||||||
| Automated_description | Expressed in several structures, including excretory system; hypodermis; neurons; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F09A5.5 | |||||||
| F09A5.5a | |||||||||
| F09A5.5b | |||||||||
| Other_sequence | AJ487578 | ||||||||
| Dviv_isotig12257 | |||||||||
| Associated_feature | WBsf979134 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00113349 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2484 | ||||||||
| Expr8459 | |||||||||
| Expr8594 | |||||||||
| Expr9257 | |||||||||
| Expr10909 | |||||||||
| Drives_construct | WBCnstr00005533 | ||||||||
| WBCnstr00006501 | |||||||||
| WBCnstr00013387 | |||||||||
| WBCnstr00013856 | |||||||||
| WBCnstr00013857 | |||||||||
| WBCnstr00013858 | |||||||||
| Expression_cluster (29) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Positive | Inside_rearr | nDf45 | ||||||
| nDf58 | |||||||||
| Positive_clone | F09A5 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10907 | |||||||
| 10927 | |||||||||
| Interpolated_map_position | X | 10.2145 | |||||||
| Reference (14) | |||||||||
| Method | Gene |
