WormBase Tree Display for Gene: WBGene00003269
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WBGene00003269 | Evidence | Paper_evidence | WBPaper00004927 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y62F5A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-41 | Person_evidence | WBPerson18 | |||||
Sequence_name | Y62F5A.8 | ||||||||
Molecular_name | Y62F5A.8 | ||||||||
Y62F5A.8a | |||||||||
Y62F5A.8b | |||||||||
Other_name | cel-mir-41 | Remark | miRBase V21 import | ||||||
Cel-Mir-36-P7 | Remark | MirGeneDB 2.1 import | |||||||
CELE_Y62F5A.8 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | mir-41 | ||||||||
DB_info | Database | miRBase | acc | MI0000012 | |||||
SignaLink | mirna | cel-mir-41 | |||||||
MirGeneDB | cel | Cel-Mir-36-P7 | |||||||
NDB | locus_tag | CELE_Y62F5A.8 | |||||||
NCBI | gene | 266869 | |||||||
RefSeq | protein | NR_000927.2 | |||||||
RNAcentral | URSid | URS00000DD001 | |||||||
URS00004354B8 | |||||||||
URS00005107DA | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar01498604 | |||||||||
WBVar01498613 | |||||||||
WBVar01498435 | |||||||||
WBVar00769683 | |||||||||
WBVar00769684 | |||||||||
WBVar00769685 | |||||||||
WBVar00145669 | |||||||||
WBVar00323158 | |||||||||
WBVar01498941 | |||||||||
In_cluster | MIR-36 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-41 encodes a microRNA, a small non-protein codong RNA; mir-41 has a potential C. briggsae ortholog; mir-41 is part of the mir-35-mir-41 cluster of miRNAs and functions redundantly with other members of this cluster to control embryonic development; mir-41 is highly expressed in the embryo and in young adults with eggs, but not at other developmental stages. | Paper_evidence | WBPaper00004927 | |||||
WBPaper00010853 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 07 Feb 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including eat-2; prg-1; and alg-1 based on RNA-seq studies. Is affected by four chemicals including methylmercury hydroxide; multi-walled carbon nanotube; and nicotine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | Y62F5A.8 | |||||||
Y62F5A.8a | |||||||||
Y62F5A.8b | |||||||||
Other_sequence | AJ487563 | ||||||||
Experimental_info | RNAi_result | WBRNAi00021224 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1659 | ||||||||
Expr2591 | |||||||||
Expr8445 | |||||||||
Expr10903 | |||||||||
Drives_construct | WBCnstr00005504 | ||||||||
WBCnstr00016916 | |||||||||
Expression_cluster (25) | |||||||||
Interaction (9) | |||||||||
Map_info | Map | II | Position | 3.739 | Error | 0.006987 | |||
Positive | Inside_rearr | nDf50 | |||||||
Positive_clone | Y62F5A | Inferred_automatically | From CDS info | ||||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5063 | |||||||
Pos_neg_data | 10920 | ||||||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |