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WormBase Tree Display for Gene: WBGene00003179

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Name Class

WBGene00003179SMapS_parentSequenceC52B9
IdentityVersion2
NameCGC_namemec-18Person_evidenceWBPerson95
Sequence_nameC52B9.9
Molecular_nameC52B9.9
C52B9.9.1
CE16940
Other_nameacs-8Person_evidenceWBPerson237
WBPerson2239
CELE_C52B9.9Accession_evidenceNDBBX284606
Public_namemec-18
DB_infoDatabaseAceViewgeneXE890
WormQTLgeneWBGene00003179
WormFluxgeneWBGene00003179
NDBlocus_tagCELE_C52B9.9
PanthergeneCAEEL|WormBase=WBGene00003179|UniProtKB=O45873
familyPTHR24096
NCBIgene180701
RefSeqproteinNM_076330.8
TREEFAMTREEFAM_IDTF313958
TrEMBLUniProtAccO45873
UniProt_GCRPUniProtAccO45873
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
211 Sep 2008 09:57:25WBPerson2970Name_changeOther_nameacs-18
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmec
Allele (52)
Legacy_information[C.elegansII] u228 : touch insensitive, lethargic.OA5: u69, u138, u182 etc. [Chalfie and Au 1989; Huang and Chalfie 1994; TU]
StrainWBStrain00035050
WBStrain00035036
RNASeq_FPKM (74)
GO_annotation (15)
OrthologWBGene00051859Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034904Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139447Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125029Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223156Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3087Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3339Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10055Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19155Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15429Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8844Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2376Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17816Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26624Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20981Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00945.g15062Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mec-18Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold622.g6208Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00002.g89Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00703Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024225Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00620Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3498Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0258700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18887Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00093388Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267241Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0033733Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0034552Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0034553Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0035641Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0035642Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0037996Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0038730Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0038731Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0038732Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0038733Drosophila melanogasterFrom_analysisOrthoFinder
Panther
FB:FBgn0038734Drosophila melanogasterFrom_analysisOrthoFinder
Panther
Paralog (17)
Structured_descriptionConcise_descriptionmec-18 encodes a protein similar to firefly luciferase and plant protein 4-coumarate coA ligase; mec-18 is involved in sensory mechanotransduction; genetic interactions with other mec genes suggest that mec-18 may be involved in negative regulation of the degenerin channel in the touch receptor neurons; mec-18 is expressed exclusively in the touch cells.Paper_evidenceWBPaper00001871
WBPaper00005666
Curator_confirmedWBPerson324
Date_last_updated12 Jun 2007 00:00:00
Automated_descriptionPredicted to enable CoA-ligase activity. Involved in detection of mechanical stimulus involved in sensory perception of touch and mechanosensory behavior. Located in neuron projection and neuronal cell body. Expressed in PLML; PLMR; and touch receptor neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC52B9.9
Corresponding_CDS_historyC52B9.9:wp108
Corresponding_transcriptC52B9.9.1
Other_sequenceOden_isotig26687
CJC09203_1
JI226556.1
Dviv_isotig32007
Associated_featureWBsf237269
Experimental_infoRNAi_resultWBRNAi00030076Inferred_automaticallyRNAi_primary
WBRNAi00012300Inferred_automaticallyRNAi_primary
WBRNAi00043019Inferred_automaticallyRNAi_primary
Expr_patternExpr269
Expr11123
Expr1023167
Expr1146983
Expr1170085
Expr2013493
Expr2031727
Drives_construct (12)
Construct_productWBCnstr00016622
WBCnstr00036192
AntibodyWBAntibody00002613
WBAntibody00002621
Microarray_results (18)
Expression_cluster (114)
Interaction (23)
Map_infoMapXPosition-7.80366Error0.004168
Well_ordered
PositivePositive_cloneC52B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point3626
4413
5588
Reference (31)
MethodGene