WormBase Tree Display for Gene: WBGene00003085
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| WBGene00003085 | Evidence | Paper_evidence | WBPaper00006348 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | ccar-1 | Person_evidence | WBPerson427 | |||||
| WBPerson220 | |||||||||
| WBPerson351 | |||||||||
| WBPerson10408 | |||||||||
| Sequence_name | Y37A1B.1 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | lst-3 | Person_evidence | WBPerson220 | ||||||
| sup-38 | Person_evidence | WBPerson261 | |||||||
| CELE_Y37A1B.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | ccar-1 | ||||||||
| DB_info | Database | AceView | gene | 4O841 | |||||
| WormQTL | gene | WBGene00003085 | |||||||
| WormFlux | gene | WBGene00003085 | |||||||
| NDB | locus_tag | CELE_Y37A1B.1 | |||||||
| Panther | gene | CAEEL|WormBase=Y37A1B.1a|UniProtKB=A0A0S4XR43 | |||||||
| family | PTHR14304 | ||||||||
| NCBI | gene | 178362 | |||||||
| RefSeq | protein | NM_001318259.3 | |||||||
| NM_001268851.3 | |||||||||
| NM_001318256.5 | |||||||||
| NM_001392438.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF316387 | |||||||
| TrEMBL | UniProtAcc | G5EBS4 | |||||||
| A0A0S4XRD3 | |||||||||
| H2KMJ3 | |||||||||
| A0A0S4XR43 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0S4XR43 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 23 Nov 2015 12:09:54 | WBPerson2970 | Event | Acquires_merge | WBGene00006343 | ||||
| Name_change | CGC_name | ccar-1 | |||||||
| Other_name | sup-38 | ||||||||
| Acquires_merge | WBGene00006343 | ||||||||
| Status | Live | ||||||||
| Gene_info (11) | |||||||||
| Molecular_info | Corresponding_CDS | Y37A1B.1a | |||||||
| Y37A1B.1b | |||||||||
| Y37A1B.1c | |||||||||
| Y37A1B.1d | |||||||||
| Corresponding_CDS_history | Y37A1B.1:wp99 | ||||||||
| Y37A1B.1a:wp229 | |||||||||
| Y37A1B.1a:wp243 | |||||||||
| Corresponding_transcript | Y37A1B.1a.1 | ||||||||
| Y37A1B.1b.1 | |||||||||
| Y37A1B.1c.1 | |||||||||
| Y37A1B.1d.1 | |||||||||
| Corresponding_transcript_history | C36C5.1a:wp251 | ||||||||
| Other_sequence (89) | |||||||||
| Associated_feature | WBsf646549 | ||||||||
| WBsf646550 | |||||||||
| WBsf655061 | |||||||||
| WBsf660903 | |||||||||
| WBsf660904 | |||||||||
| WBsf660905 | |||||||||
| WBsf981848 | |||||||||
| WBsf229476 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020197 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062059 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055852 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078914 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078918 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026643 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036775 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001683 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13770 | ||||||||
| Expr13771 | |||||||||
| Expr1016193 | |||||||||
| Expr1031460 | |||||||||
| Expr1159376 | |||||||||
| Expr2009747 | |||||||||
| Expr2027987 | |||||||||
| Drives_construct | WBCnstr00037955 | ||||||||
| WBCnstr00039987 | |||||||||
| Construct_product | WBCnstr00037955 | ||||||||
| WBCnstr00039987 | |||||||||
| WBCnstr00039988 | |||||||||
| Microarray_results | SMD_Y37A1B.1 | ||||||||
| 174939_s_at | |||||||||
| 180736_s_at | |||||||||
| A_12_P102661 | |||||||||
| A_12_P109935 | |||||||||
| Aff_Y37A1B.1 | |||||||||
| GPL13394_WBGene00003085 | |||||||||
| GPL13914_Y37A1B.1 | |||||||||
| GPL14144_Y37A1B.1a_2821-2880_0.860_43_C | |||||||||
| GPL14144_Y37A1B.1a_2904-2963_0.912_11_B | |||||||||
| GPL14144_Y37A1B.1a_3136-3195_0.917_8_A | |||||||||
| GPL19516_CGZ0044068 | |||||||||
| GPL19516_CGZ0044069 | |||||||||
| GPL19516_CGZ0044070 | |||||||||
| GPL19516_CGZ0044071 | |||||||||
| GPL21109_Y37A1B.1a | |||||||||
| GPL21109_Y37A1B.1b.1 | |||||||||
| GPL21109_Y37A1B.1b.2 | |||||||||
| GPL21109_Y37A1B.1c | |||||||||
| GPL3518_CE19070 | |||||||||
| GPL8304_CE_WBGene00003085_A | |||||||||
| GPL8304_CE_WBGene00003085_B | |||||||||
| GPL8304_CE_WBGene00003085_C | |||||||||
| GPL8673_Y37A1B_1aP02169 | |||||||||
| GPL8673_Y37A1B_1aP02493 | |||||||||
| GPL8673_Y37A1B_1aP02918 | |||||||||
| GPL8673_Y37A1B_1bP00535 | |||||||||
| GPL8673_Y37A1B_1bP00861 | |||||||||
| GPL8673_Y37A1B_1bP01263 | |||||||||
| GPL9450_Y37A1B.1 | |||||||||
| cea2.p.100641 | |||||||||
| Expression_cluster (133) | |||||||||
| SAGE_tag | SAGE:tcgtttgcagtcttgaa | Strand | Antisense | ||||||
| SAGE:gaaccagctgattcggg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctcttcgccaaattgta | Strand | Antisense | |||||||
| SAGE:tcgtttgcag | Strand | Antisense | |||||||
| SAGE:ctcttcgcca | Strand | Antisense | |||||||
| SAGE:ctgatcgcattttttct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctgatcgcat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gaaccagctg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (323) | |||||||||
| Map_info | Map | IV | Position | 11.4013 | Error | 0.012009 | |||
| Positive | Positive_clone | Y37A1B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4998 | |||||||
| 5062 | |||||||||
| 2401 | |||||||||
| 2402 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
