WormBase Tree Display for Gene: WBGene00003085

WBGene00003085 Evidence: Paper_evidence: WBPaper00006348
  SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: ccar-1 Person_evidence: WBPerson427
            WBPerson220
            WBPerson351
            WBPerson10408
      Sequence_name: Y37A1B.1
      Molecular_name (12)
      Other_name: lst-3 Person_evidence: WBPerson220
        sup-38 Person_evidence: WBPerson261
        CELE_Y37A1B.1 Accession_evidence: NDB BX284604
      Public_name: ccar-1
    DB_info: Database: AceView gene 4O841
        WormQTL gene WBGene00003085
        WormFlux gene WBGene00003085
        NDB locus_tag CELE_Y37A1B.1
        Panther gene CAEEL|WormBase=Y37A1B.1a|UniProtKB=A0A0S4XR43
          family PTHR14304
        NCBI gene 178362
        RefSeq protein NM_001318259.3
            NM_001268851.3
            NM_001318256.5
            NM_001392438.1
        TREEFAM TREEFAM_ID TF316387
        TrEMBL UniProtAcc G5EBS4
            A0A0S4XRD3
            H2KMJ3
            A0A0S4XR43
        UniProt_GCRP UniProtAcc A0A0S4XR43
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 23 Nov 2015 12:09:54 WBPerson2970 Event: Acquires_merge: WBGene00006343
              Name_change: CGC_name: ccar-1
                Other_name: sup-38
      Acquires_merge: WBGene00006343
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ccar
    Allele (105)
    Legacy_information: ra5, ra13, ra14, ra17, ra18, ra20, ra21, and
      [C.elegansII] ra5sd : semidominant suppressor of class 1(paralysed) unc-52 alleles; does not suppress Unc-52 gonad defects, nor lethal (class 2 and 3) unc-52 alleles. In unc-52(+) background, ra5 homozygotes exhibit some muscle fragility, low brood size (<30). Probable gf allele. OA4(sd):ra14 (brood <10), ra18, ra21 (weaker). Also intragenic revertants: ra5ra60 (Mel, progeny die as larvae; rescued zygotically; probable null), ra5ra55 (leaky, viable). Also lf allele: n2667 (abnormal axon growth, processes missing in left ventral nerve cord. [Gilchrist and Moerman 1992; DM; EG; MT]
    Complementation_data: [Gilchrist EJ] complements tra-3, let-323(s1719),
    Strain: WBStrain00027277
      WBStrain00027278
      WBStrain00036261
      WBStrain00005866
      WBStrain00005867
      WBStrain00005868
      WBStrain00005869
      WBStrain00005870
      WBStrain00008439
    RNASeq_FPKM (74)
    GO_annotation: 00001814
      00001815
      00001816
      00001817
      00001818
      00010111
      00010112
      00021351
      00110565
    Contained_in_operon: CEOP4576
    Ortholog (40)
    Structured_description: Automated_description: Predicted to enable hydrolase activity. Involved in hemidesmosome assembly. Predicted to be located in nucleus. Expressed widely. Is an ortholog of human CCAR1 (cell division cycle and apoptosis regulator 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y37A1B.1a
      Y37A1B.1b
      Y37A1B.1c
      Y37A1B.1d
    Corresponding_CDS_history: Y37A1B.1:wp99
      Y37A1B.1a:wp229
      Y37A1B.1a:wp243
    Corresponding_transcript: Y37A1B.1a.1
      Y37A1B.1b.1
      Y37A1B.1c.1
      Y37A1B.1d.1
    Corresponding_transcript_history: C36C5.1a:wp251
    Other_sequence (89)
    Associated_feature: WBsf646549
      WBsf646550
      WBsf655061
      WBsf660903
      WBsf660904
      WBsf660905
      WBsf981848
      WBsf229476
  Experimental_info: RNAi_result: WBRNAi00020197 Inferred_automatically: RNAi_primary
      WBRNAi00027514 Inferred_automatically: RNAi_primary
      WBRNAi00062059 Inferred_automatically: RNAi_primary
      WBRNAi00055852 Inferred_automatically: RNAi_primary
      WBRNAi00083102 Inferred_automatically: RNAi_primary
      WBRNAi00078914 Inferred_automatically: RNAi_primary
      WBRNAi00078918 Inferred_automatically: RNAi_primary
      WBRNAi00026643 Inferred_automatically: RNAi_primary
      WBRNAi00036775 Inferred_automatically: RNAi_primary
      WBRNAi00001683 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13770
      Expr13771
      Expr1016193
      Expr1031460
      Expr1159376
      Expr2009747
      Expr2027987
    Drives_construct: WBCnstr00037955
      WBCnstr00039987
    Construct_product: WBCnstr00037955
      WBCnstr00039987
      WBCnstr00039988
    Microarray_results (31)
    Expression_cluster (133)
    SAGE_tag: SAGE:tcgtttgcagtcttgaa Strand: Antisense
      SAGE:gaaccagctgattcggg Strand: Sense
        Unambiguously_mapped
      SAGE:ctcttcgccaaattgta Strand: Antisense
      SAGE:tcgtttgcag Strand: Antisense
      SAGE:ctcttcgcca Strand: Antisense
      SAGE:ctgatcgcattttttct Strand: Sense
        Unambiguously_mapped
      SAGE:ctgatcgcat Strand: Sense
        Unambiguously_mapped
      SAGE:gaaccagctg Strand: Sense
        Unambiguously_mapped
    Interaction (323)
  Map_info: Map: IV Position: 11.4013 Error: 0.012009
    Positive: Positive_clone: Y37A1B Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4998
        5062
        2401
        2402
    Pseudo_map_position
  Reference (19)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene