WormBase Tree Display for Gene: WBGene00003079
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| WBGene00003079 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F28F8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lsm-5 | |||||||
| Sequence_name | F28F8.3 | ||||||||
| Molecular_name | F28F8.3 | ||||||||
| F28F8.3.1 | |||||||||
| CE09757 | |||||||||
| Other_name | CELE_F28F8.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lsm-5 | ||||||||
| DB_info | Database | AceView | gene | 5Q49 | |||||
| WormQTL | gene | WBGene00003079 | |||||||
| WormFlux | gene | WBGene00003079 | |||||||
| NDB | locus_tag | CELE_F28F8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003079|UniProtKB=O18694 | |||||||
| family | PTHR20971 | ||||||||
| NCBI | gene | 180047 | |||||||
| RefSeq | protein | NM_001380830.1 | |||||||
| TREEFAM | TREEFAM_ID | TF313575 | |||||||
| TrEMBL | UniProtAcc | O18694 | |||||||
| UniProt_GCRP | UniProtAcc | O18694 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsm | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00037485 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Is an ortholog of human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28F8.3 | |||||||
| Corresponding_transcript | F28F8.3.1 | ||||||||
| Other_sequence (60) | |||||||||
| Associated_feature | WBsf647601 | ||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1010827 | ||||||||
| Expr1031454 | |||||||||
| Expr1149754 | |||||||||
| Expr2013292 | |||||||||
| Expr2031523 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (121) | |||||||||
| SAGE_tag | SAGE:ttcacgtagt | Strand | Antisense | ||||||
| SAGE:gttctggaggacgtcgt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gttctggagg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttcacgtagtcatcgaa | Strand | Antisense | |||||||
| Interaction (235) | |||||||||
| Map_info | Map | V | Position | 8.36658 | Error | 0.003911 | |||
| Positive | Positive_clone | F28F8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028564 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046572 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059378 | |||||||||
| WBPaper00059527 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
