WormBase Tree Display for Gene: WBGene00003059
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| WBGene00003059 | Evidence | Paper_evidence | WBPaper00005707 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C48E7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lpd-2 | Person_evidence | WBPerson545 | |||||
| Sequence_name | C48E7.3 | ||||||||
| Molecular_name | C48E7.3 | ||||||||
| C48E7.3.1 | |||||||||
| CE29953 | |||||||||
| Other_name | CELE_C48E7.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | lpd-2 | ||||||||
| DB_info | Database | AceView | gene | 1G831 | |||||
| WormQTL | gene | WBGene00003059 | |||||||
| WormFlux | gene | WBGene00003059 | |||||||
| NDB | locus_tag | CELE_C48E7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003059|UniProtKB=Q8IG68 | |||||||
| family | PTHR13237 | ||||||||
| NCBI | gene | 172320 | |||||||
| RefSeq | protein | NM_059405.7 | |||||||
| TREEFAM | TREEFAM_ID | TF313713 | |||||||
| TrEMBL | UniProtAcc | Q8IG68 | |||||||
| UniProt_GCRP | UniProtAcc | Q8IG68 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lpd | ||||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084161 | ||||||||
| 00084162 | |||||||||
| 00084163 | |||||||||
| 00084164 | |||||||||
| Contained_in_operon | CEOP1316 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00011311 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Expressed in nervous system. Is an ortholog of human NGDN (neuroguidin). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C48E7.3 | |||||||
| Corresponding_transcript | C48E7.3.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf643346 | ||||||||
| WBsf656375 | |||||||||
| WBsf976722 | |||||||||
| WBsf976723 | |||||||||
| WBsf978332 | |||||||||
| WBsf217782 | |||||||||
| Transcription_factor | WBTranscriptionFactor000371 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr7480 | ||||||||
| Expr1016333 | |||||||||
| Expr1031437 | |||||||||
| Expr1146733 | |||||||||
| Expr2013250 | |||||||||
| Expr2031481 | |||||||||
| Drives_construct | WBCnstr00012624 | ||||||||
| WBCnstr00036256 | |||||||||
| Construct_product | WBCnstr00016553 | ||||||||
| WBCnstr00022539 | |||||||||
| WBCnstr00036256 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (181) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | I | Position | 0.893883 | Error | 0.001094 | |||
| Positive | Positive_clone | C48E7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5140 | |||||||
| 4805 | |||||||||
| 4841 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005707 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029292 | |||||||||
| WBPaper00033126 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00050895 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064415 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
