WormBase Tree Display for Gene: WBGene00002850
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| WBGene00002850 | SMap | S_parent | Sequence | C16A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | let-716 | Person_evidence | WBPerson533 | |||||
| Sequence_name | C16A3.3 | ||||||||
| Molecular_name | C16A3.3 | ||||||||
| C16A3.3.1 | |||||||||
| CE27690 | |||||||||
| Other_name | CELE_C16A3.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | let-716 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00002850 | |||||
| WormFlux | gene | WBGene00002850 | |||||||
| NDB | locus_tag | CELE_C16A3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002850|UniProtKB=Q18038 | |||||||
| family | PTHR23270 | ||||||||
| NCBI | gene | 175906 | |||||||
| RefSeq | protein | NM_065997.5 | |||||||
| TREEFAM | TREEFAM_ID | TF105697 | |||||||
| TrEMBL | UniProtAcc | Q18038 | |||||||
| UniProt_GCRP | UniProtAcc | Q18038 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:29 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 30 Jan 2008 10:06:04 | WBPerson2970 | Event | Acquires_merge | WBGene00015808 | ||||
| Name_change | Sequence_name | C16A3.3 | |||||||
| Acquires_merge | WBGene00015808 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | let | ||||||||
| Allele (64) | |||||||||
| Legacy_information | [Stewart HI] homozygotes arrest at early larval stage | ||||||||
| [C.elegansII] s2457 : early larval lethal. OA1: s2626 (similar). [BC] | |||||||||
| Strain | WBStrain00000771 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060046 | ||||||||
| 00060047 | |||||||||
| 00060048 | |||||||||
| 00060049 | |||||||||
| 00060050 | |||||||||
| 00110407 | |||||||||
| 00110408 | |||||||||
| 00110409 | |||||||||
| Contained_in_operon | CEOP3368 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PDCD11 (programmed cell death 11). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16A3.3 | |||||||
| Corresponding_transcript | C16A3.3.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf659070 | ||||||||
| WBsf225096 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr1013064 | ||||||||
| Expr1031366 | |||||||||
| Expr1144708 | |||||||||
| Expr2013072 | |||||||||
| Expr2031304 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (121) | |||||||||
| SAGE_tag (21) | |||||||||
| Interaction (353) | |||||||||
| Map_info | Map | III | Position | -1.31646 | Error | 0.00703 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | sDf127 | |||||||
| sDf125 | |||||||||
| sDp3 | |||||||||
| Positive_clone | C16A3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Multi_point | 3328 | |||||||
| Pos_neg_data | 8680 | ||||||||
| 8695 | |||||||||
| 8708 | |||||||||
| 8711 | |||||||||
| 8753 | |||||||||
| 8770 | |||||||||
| 9198 | |||||||||
| Reference | WBPaper00002901 | ||||||||
| WBPaper00003304 | |||||||||
| WBPaper00015389 | |||||||||
| WBPaper00023496 | |||||||||
| WBPaper00028451 | |||||||||
| WBPaper00031176 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Rescue for s2457 was to fertile adult and for s2626 to sterile adult from early larval arrest stages. | ||||||||
| Method | Gene |
