WormBase Tree Display for Gene: WBGene00002280

WBGene00002280 SMap: S_parent: Sequence: F01G12
  Identity: Version: 1
    Name: CGC_name: let-2 Person_evidence: WBPerson533
      Sequence_name: F01G12.5
      Molecular_name: F01G12.5a
        F01G12.5a.1
        CE04334
        F01G12.5b
        CE04335
        F01G12.5b.1
      Other_name: clb-1
        let-8
        sup-20
        alpha-2 (IV) collagen Accession_evidence: EMBL J05066
        CELE_F01G12.5 Accession_evidence: NDB BX284606
      Public_name: let-2
    DB_info: Database: AceView gene XQ996
        WormQTL gene WBGene00002280
        WormFlux gene WBGene00002280
        NDB locus_tag CELE_F01G12.5
        Panther gene CAEEL|WormBase=WBGene00002280|UniProtKB=P17140
          family PTHR24023
        NCBI gene 181708
        RefSeq protein NM_078262.7
            NM_078263.5
        SwissProt UniProtAcc P17140
        UniProt_GCRP UniProtAcc P17140
        OMIM gene 120130
            303630
            303631
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:27 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (13)
  Disease_info: Potential_model: DOID:0111547 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2202)
      DOID:0111740 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2208)
      DOID:10983 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2207)
      DOID:0110034 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2207)
      DOID:13223 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2202)
      DOID:5844 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2202)
      DOID:0090125 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:2202)
  Molecular_info: Corresponding_CDS: F01G12.5a
      F01G12.5b
    Corresponding_CDS_history: F01G12.5c:wp123
    Corresponding_transcript: F01G12.5a.1
      F01G12.5b.1
    Other_sequence: DN190874.1
      MHC11025_1
      MJC01283_1
      MJ00688
      CBC08295_1
      PP00057
      MHC11386_1
      DVC00101_1
      PP02069
      MHC10535_1
      GP00536
      Hbac_isotig02894
      CK850367.1
      AI313836.1
      HC02809
      CR01414
      BU587016.1
      ASC01057_1
      AI317995.1
      SSC03603_1
      BG809043.1
      OVC04886_1
      EV851683.1
      TM02571
      FG979469.1
      CJC11108_1
      FG353887.1
      MA00338
      FC539087.1
      HCC00434_1
      TMC04403_1
      SSC02960_1
      ACC10827_1
      JI229710.1
      CK850778.1
      MI00399
      HBC24947_1
      WBC01805_1
      AI665807.1
      ASC00006_2
      JI482318.1
      CRC06213_1
      AS04351
      JI235953.1
      MH05648
      OVC02566_1
      CJC17229_1
      FC817008.1
      AW313050.1
      TM01192
      JI232659.1
      EX537596.1
      Dviv_isotig22915
      FC811470.1
      CRC01867_1
      AI322134.1
      XIC05125_1
      SS00843
      BMC08998_1
      GP01347
      MI04142
      SS00779
      PTC00668_1
      AAC00288_1
      MIC01960_1
      HG07893
      CJC02615_1
      JI480474.1
      BMC15822_1
      CJC03185_1
      EX544050.1
      Name_isotig07615
      AI618890.1
      AW355817.1
      EX538660.1
      JI474009.1
      TMC00782_1
      SRC01505_1
      Tcol_isotig14481
      MAC03084_1
      EX912705.1
      AA668083.1
      ACC30741_1
      XI04579
      AS08440
      AA294028.1
      AA294667.1
      FC812489.1
      CK855228.1
      SS01234
      PPC01078_1
      Tcol_isotig14488
      ALC01018_1
      CR04642
      JI164175.1
      OOC01113_1
      HGC04370_1
      JO471518.1
      MIC02223_1
      AS01623
      AI045996.1
      EV851574.1
      Tcir_isotig08112
      Acan_isotig08592
      CBC00015_1
      BUC01562_1
      Oden_isotig19248
      CK855331.1
      MI04483
      EX536870.1
      Tcir_isotig32700
      GPC00139_1
      CK854931.1
      EV854328.1
      CK850550.1
      BMC15465_1
    Associated_feature (51)
  Experimental_info: RNAi_result: WBRNAi00025000 Inferred_automatically: RNAi_primary
      WBRNAi00066565 Inferred_automatically: RNAi_primary
      WBRNAi00001036 Inferred_automatically: RNAi_primary
      WBRNAi00001670 Inferred_automatically: RNAi_primary
      WBRNAi00087194 Inferred_automatically: RNAi_primary
      WBRNAi00065710 Inferred_automatically: RNAi_primary
      WBRNAi00043776 Inferred_automatically: RNAi_primary
      WBRNAi00027255 Inferred_automatically: RNAi_primary
      WBRNAi00066751 Inferred_automatically: RNAi_primary
      WBRNAi00012754 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram482
      Chronogram739
      Expr519
      Expr5656
      Expr5657
      Expr1027804
      Expr1031343
      Expr1147753
      Expr2013052
      Expr2031284
    Drives_construct: WBCnstr00003098
      WBCnstr00004542
      WBCnstr00012415
      WBCnstr00036337
    Construct_product: WBCnstr00005093
      WBCnstr00012415
      WBCnstr00036337
    Antibody: WBAntibody00001079
      WBAntibody00001629
      WBAntibody00001812
      WBAntibody00001814
    Microarray_results (29)
    Expression_cluster (244)
    Interaction (107)
  Map_info: Map: X Position: 23.9206 Error: 0.003433
    Well_ordered
    Positive: Inside_rearr: mnDp26
      Positive_clone: CH#1
        F01G12 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 200
        202
        603
        604
        605
        606
        612
        613
        615
        616
      Multi_point (14)
      Pos_neg_data (20)
  Reference (117)
  Remark: Data extracted from Williams & Waterston 1994 and Liu et al. 1996
    [Liu J] sequence alteration in R1783K
  Method: Gene