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WormBase Tree Display for Gene: WBGene00002274

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Name Class

WBGene00002274EvidenceAccession_evidenceEMBLAB038502
SMapS_parentSequenceF38A5
IdentityVersion1
NameCGC_namelec-11
Sequence_nameF38A5.3
Molecular_nameF38A5.3a
F38A5.3a.1
CE28303
F38A5.3b
Other_nameCELE_F38A5.3Accession_evidenceNDBBX284604
Public_namelec-11
DB_infoDatabaseAceViewgene4H354
WormQTLgeneWBGene00002274
WormFluxgeneWBGene00002274
NDBlocus_tagCELE_F38A5.3
PanthergeneCAEEL|WormBase=WBGene00002274|UniProtKB=Q94215
familyPTHR11346
NCBIgene177420
RefSeqproteinNR_131549.1
NM_001028020.6
TrEMBLUniProtAccQ94215
UniProt_GCRPUniProtAccQ94215
RNAcentralURSidURS0000438852
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:27WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlec
AlleleWBVar00427236
WBVar00427237
WBVar00427238
WBVar00427239
WBVar00427240
WBVar00427241
WBVar00427242
WBVar01499395
WBVar01499396
WBVar02120505
WBVar00250920
WBVar01499633
WBVar00916897
WBVar00916898
WBVar00916899
WBVar00916900
WBVar00916901
WBVar00916902
WBVar00916903
WBVar00916904
WBVar00916905
WBVar00916906
WBVar00916907
WBVar00190126
WBVar00190127
WBVar01500245
RNASeq_FPKM (74)
GO_annotation00087317
00087318
00087319
00087320
00087321
00087322
00110346
OrthologWBGene00067056Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00075897Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00027862Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00155287Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122396Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00207210Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g10761Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9731Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19182Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3185Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13980Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17096Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10872Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12278Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27518Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3823Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4124Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00391.g10184Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lec-11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13580Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17819Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00172.g6248Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06657Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013726Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10332Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17006Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40172200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10652Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00268022Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290216Trichuris murisFrom_analysisWormBase-Compara
WBGene00301846Trichuris murisFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-030131-4324Danio rerioFrom_analysisInparanoid
Panther
ZFIN:ZDB-GENE-030131-7667Danio rerioFrom_analysisInparanoid
Panther
Paralog (26)
Structured_descriptionConcise_descriptionlec-11 encodes a predicted member of the galectin family that shares highest similarity with lec-7 through lec-10 within the C-terminal tail and also shares a higher relative histidine content in common with lec-7 through lec-10; can bind sugar in vitro.Paper_evidenceWBPaper00011877
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable galactoside binding activity. Involved in innate immune response. Located in cytoplasm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF38A5.3a
Corresponding_CDS_historyF38A5.3b:wp240
Corresponding_transcriptF38A5.3b
F38A5.3a.1
Other_sequence (11)
Associated_featureWBsf651854
WBsf230176
Experimental_infoRNAi_resultWBRNAi00095431Inferred_automaticallyRNAi_primary
WBRNAi00014529Inferred_automaticallyRNAi_primary
WBRNAi00046673Inferred_automaticallyRNAi_primary
WBRNAi00095428Inferred_automaticallyRNAi_primary
WBRNAi00095415Inferred_automaticallyRNAi_primary
Expr_patternExpr5991
Expr1021522
Expr1150548
Expr2013032
Expr2031264
Drives_constructWBCnstr00003453
WBCnstr00036339
Construct_productWBCnstr00036339
Microarray_results (25)
Expression_cluster (295)
InteractionWBInteraction000348806
WBInteraction000350495
WBInteraction000405645
WBInteraction000432845
WBInteraction000542656
Map_infoMapIVPosition3.21089Error0.000399
PositivePositive_cloneF38A5Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point5293
4804
4840
Pseudo_map_position
ReferenceWBPaper00011877
WBPaper00028482
WBPaper00032075
WBPaper00032196
WBPaper00032370
WBPaper00034766
WBPaper00037859
WBPaper00040257
WBPaper00062289
WBPaper00065225
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene