WormBase Tree Display for Gene: WBGene00002274
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WBGene00002274 | Evidence | Accession_evidence | EMBL | AB038502 | |||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F38A5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | lec-11 | |||||||
Sequence_name | F38A5.3 | ||||||||
Molecular_name | F38A5.3a | ||||||||
F38A5.3a.1 | |||||||||
CE28303 | |||||||||
F38A5.3b | |||||||||
Other_name | CELE_F38A5.3 | Accession_evidence | NDB | BX284604 | |||||
Public_name | lec-11 | ||||||||
DB_info | Database | AceView | gene | 4H354 | |||||
WormQTL | gene | WBGene00002274 | |||||||
WormFlux | gene | WBGene00002274 | |||||||
NDB | locus_tag | CELE_F38A5.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002274|UniProtKB=Q94215 | |||||||
family | PTHR11346 | ||||||||
NCBI | gene | 177420 | |||||||
RefSeq | protein | NR_131549.1 | |||||||
NM_001028020.6 | |||||||||
TrEMBL | UniProtAcc | Q94215 | |||||||
UniProt_GCRP | UniProtAcc | Q94215 | |||||||
RNAcentral | URSid | URS0000438852 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lec | ||||||||
Allele (26) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00087317 | ||||||||
00087318 | |||||||||
00087319 | |||||||||
00087320 | |||||||||
00087321 | |||||||||
00087322 | |||||||||
00110346 | |||||||||
Ortholog (33) | |||||||||
Paralog (26) | |||||||||
Structured_description | Concise_description | lec-11 encodes a predicted member of the galectin family that shares highest similarity with lec-7 through lec-10 within the C-terminal tail and also shares a higher relative histidine content in common with lec-7 through lec-10; can bind sugar in vitro. | Paper_evidence | WBPaper00011877 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable galactoside binding activity. Involved in innate immune response. Located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F38A5.3a | |||||||
Corresponding_CDS_history | F38A5.3b:wp240 | ||||||||
Corresponding_transcript | F38A5.3b | ||||||||
F38A5.3a.1 | |||||||||
Other_sequence (11) | |||||||||
Associated_feature | WBsf651854 | ||||||||
WBsf230176 | |||||||||
Experimental_info | RNAi_result | WBRNAi00095431 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014529 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046673 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095428 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095415 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr5991 | ||||||||
Expr1021522 | |||||||||
Expr1150548 | |||||||||
Expr2013032 | |||||||||
Expr2031264 | |||||||||
Drives_construct | WBCnstr00003453 | ||||||||
WBCnstr00036339 | |||||||||
Construct_product | WBCnstr00036339 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (295) | |||||||||
Interaction | WBInteraction000348806 | ||||||||
WBInteraction000350495 | |||||||||
WBInteraction000405645 | |||||||||
WBInteraction000432845 | |||||||||
WBInteraction000542656 | |||||||||
Map_info | Map | IV | Position | 3.21089 | Error | 0.000399 | |||
Positive | Positive_clone | F38A5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5293 | |||||||
4804 | |||||||||
4840 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00011877 | ||||||||
WBPaper00028482 | |||||||||
WBPaper00032075 | |||||||||
WBPaper00032196 | |||||||||
WBPaper00032370 | |||||||||
WBPaper00034766 | |||||||||
WBPaper00037859 | |||||||||
WBPaper00040257 | |||||||||
WBPaper00062289 | |||||||||
WBPaper00065225 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |