WormBase Tree Display for Gene: WBGene00002261
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| WBGene00002261 | SMap | S_parent | Sequence | F58A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ldb-1 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F58A3.1 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_F58A3.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ldb-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ldb | ||||||||
| Allele (175) | |||||||||
| Strain | WBStrain00035330 | ||||||||
| WBStrain00035331 | |||||||||
| WBStrain00035332 | |||||||||
| WBStrain00035942 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Concise_description | ldb-1 encodes an Ldb/NLI/Clim member of the nuclear LIM binding protein family that affects coordinated locomotion, vulval development, mechanosensation, and growth of larvae and is required for transcriptional activation of mec-2; can interact with MEC-3 to activate transcription using yeast two-hybrid assays and is expressed in all neurons, vulval cells, gonadal sheath cells, and in some body muscle cells. | Paper_evidence | WBPaper00004360 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription factor activity; DNA-binding transcription factor binding activity; and LIM domain binding activity. Involved in several processes, including mechanosensory behavior; positive regulation of vulval development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in several structures, including AIY; body wall musculature; gonad; neurons; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58A3.1a | |||||||
| F58A3.1b | |||||||||
| F58A3.1c | |||||||||
| Corresponding_transcript | F58A3.1a.1 | ||||||||
| F58A3.1a.2 | |||||||||
| F58A3.1b.1 | |||||||||
| F58A3.1b.2 | |||||||||
| F58A3.1c.1 | |||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf663291 | ||||||||
| WBsf663292 | |||||||||
| WBsf663293 | |||||||||
| WBsf663294 | |||||||||
| WBsf663295 | |||||||||
| WBsf663296 | |||||||||
| WBsf663297 | |||||||||
| WBsf663298 | |||||||||
| WBsf663299 | |||||||||
| WBsf663300 | |||||||||
| WBsf663301 | |||||||||
| WBsf663302 | |||||||||
| WBsf663303 | |||||||||
| WBsf663304 | |||||||||
| WBsf663305 | |||||||||
| WBsf663306 | |||||||||
| WBsf663307 | |||||||||
| WBsf663308 | |||||||||
| WBsf663309 | |||||||||
| WBsf663310 | |||||||||
| WBsf663311 | |||||||||
| WBsf1006880 | |||||||||
| WBsf1006881 | |||||||||
| WBsf1006882 | |||||||||
| WBsf1006883 | |||||||||
| WBsf1006884 | |||||||||
| WBsf1006885 | |||||||||
| WBsf1006886 | |||||||||
| WBsf1006887 | |||||||||
| WBsf1006888 | |||||||||
| WBsf1006889 | |||||||||
| WBsf1006890 | |||||||||
| WBsf1006891 | |||||||||
| WBsf1023800 | |||||||||
| WBsf1023801 | |||||||||
| WBsf1023802 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00001140 | ||||||||
| WBCnstr00001141 | |||||||||
| WBCnstr00001142 | |||||||||
| WBCnstr00012735 | |||||||||
| WBCnstr00013820 | |||||||||
| WBCnstr00015067 | |||||||||
| WBCnstr00036350 | |||||||||
| WBCnstr00042256 | |||||||||
| Construct_product | WBCnstr00036350 | ||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | X | Position | 2.85696 | Error | 0.000347 | |||
| Positive | Positive_clone | F58A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4384 | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Sequence connection from [Cassata G, Burglin T] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
