WormBase Tree Display for Gene: WBGene00002142
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| WBGene00002142 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | inx-20 | Person_evidence | WBPerson247 | |||||
| Sequence_name | T23H4.1 | ||||||||
| Molecular_name | T23H4.1a | ||||||||
| T23H4.1a.1 | |||||||||
| CE25125 | |||||||||
| T23H4.1b | |||||||||
| CE45542 | |||||||||
| T23H4.1c | |||||||||
| CE45699 | |||||||||
| T23H4.1b.1 | |||||||||
| T23H4.1c.1 | |||||||||
| Other_name | opu-20 | ||||||||
| CELE_T23H4.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | inx-20 | ||||||||
| DB_info | Database | AceView | gene | 1K453 | |||||
| WormQTL | gene | WBGene00002142 | |||||||
| WormFlux | gene | WBGene00002142 | |||||||
| NDB | locus_tag | CELE_T23H4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002142|UniProtKB=P91827 | |||||||
| family | PTHR11893 | ||||||||
| NCBI | gene | 188818 | |||||||
| RefSeq | protein | NM_001264307.3 | |||||||
| NM_001264306.2 | |||||||||
| NM_001264308.4 | |||||||||
| TrEMBL | UniProtAcc | G5EGL4 | |||||||
| P91827 | |||||||||
| E5QCJ1 | |||||||||
| UniProt_GCRP | UniProtAcc | P91827 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | inx | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00031421 | ||||||||
| WBStrain00031564 | |||||||||
| WBStrain00005324 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Automated_description | Predicted to enable gap junction channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in gap junction and plasma membrane. Expressed in pharyngeal cell and rectal valve cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23H4.1a | |||||||
| T23H4.1b | |||||||||
| T23H4.1c | |||||||||
| Corresponding_transcript | T23H4.1a.1 | ||||||||
| T23H4.1b.1 | |||||||||
| T23H4.1c.1 | |||||||||
| Other_sequence | HGC05276_1 | ||||||||
| HG09477 | |||||||||
| Associated_feature | WBsf984842 | ||||||||
| WBsf218368 | |||||||||
| WBsf218369 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070743 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004296 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070742 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8688 | ||||||||
| Expr1023748 | |||||||||
| Expr1031257 | |||||||||
| Expr1157536 | |||||||||
| Expr2012795 | |||||||||
| Expr2031034 | |||||||||
| Drives_construct | WBCnstr00013456 | ||||||||
| WBCnstr00016955 | |||||||||
| WBCnstr00021044 | |||||||||
| WBCnstr00022763 | |||||||||
| WBCnstr00036419 | |||||||||
| Construct_product | WBCnstr00036419 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (89) | |||||||||
| SAGE_tag | SAGE:gatttttgca | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtgtaccaga | Strand | Antisense | |||||||
| SAGE:agtcgagaagatttaca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agaggaaccaaaactga | Strand | Antisense | |||||||
| SAGE:gtatactccctgttaac | Strand | Antisense | |||||||
| Interaction | WBInteraction000007978 | ||||||||
| WBInteraction000567683 | |||||||||
| Map_info | Map | I | Position | 3.9734 | Error | 0.002657 | |||
| Positive | Positive_clone | T23H4 | Person_evidence | WBPerson43 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4447 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002950 | ||||||||
| WBPaper00028502 | |||||||||
| WBPaper00049897 | |||||||||
| WBPaper00063537 | |||||||||
| WBPaper00063674 | |||||||||
| WBPaper00065006 | |||||||||
| Remark | inx-20 and lep-1 has been merged in WS89 and unmerged in WS104 due to SNP mapping evidence. Unmerging also unlinks its other_name opu-20 which is an other_name of inx-20 | Person_evidence | WBPerson178 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
