WormBase Tree Display for Gene: WBGene00001976
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WBGene00001976 | SMap | S_parent | Sequence | T05A7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | hmg-11 | |||||||
Sequence_name | T05A7.4 | ||||||||
Molecular_name | T05A7.4 | ||||||||
T05A7.4.1 | |||||||||
CE04890 | |||||||||
Other_name | hmg-I-alpha | Accession_evidence | EMBL | AF056578 | |||||
CELE_T05A7.4 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | hmg-11 | ||||||||
DB_info | Database (10) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hmg | ||||||||
Allele (11) | |||||||||
Strain | WBStrain00001708 | ||||||||
WBStrain00031938 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00109826 | ||||||||
Ortholog | WBGene00108498 | Pristionchus pacificus | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WBGene00067525 | Caenorhabditis remanei | From_analysis | OMA | ||||||
WBGene00154464 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
chrII_pilon.g4289 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
HGNC:5009 | Homo sapiens | From_analysis | OMA | ||||||
PhylomeDB | |||||||||
Structured_description | Automated_description | Predicted to enable DNA binding activity. Expressed in head. Human ortholog(s) of this gene implicated in several diseases, including Silver-Russell syndrome; leiomyoma; and ovarian cancer. Is an ortholog of human HMGA2 (high mobility group AT-hook 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:127 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5009) | ||||
DOID:14681 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5009) | ||||||
DOID:3315 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5009) | ||||||
DOID:2394 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5009) | ||||||
Molecular_info | Corresponding_CDS | T05A7.4 | |||||||
Corresponding_transcript | T05A7.4.1 | ||||||||
Other_sequence | CRC00496_1 | ||||||||
CR02174 | |||||||||
CRC10991_1 | |||||||||
CBC00660_1 | |||||||||
Associated_feature (14) | |||||||||
Transcription_factor | WBTranscriptionFactor000399 | ||||||||
Experimental_info | RNAi_result | WBRNAi00035171 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00052448 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018185 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090567 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107340 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1768 | ||||||||
Expr6611 | |||||||||
Expr10332 | |||||||||
Expr10333 | |||||||||
Expr1018682 | |||||||||
Expr1031146 | |||||||||
Expr1156070 | |||||||||
Expr1200182 | |||||||||
Expr2012517 | |||||||||
Expr2030756 | |||||||||
Drives_construct | WBCnstr00002532 | ||||||||
WBCnstr00015262 | |||||||||
WBCnstr00036547 | |||||||||
Construct_product | WBCnstr00018593 | ||||||||
WBCnstr00036547 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (276) | |||||||||
Interaction (98) | |||||||||
Map_info | Map | II | Position | -3.6808 | Error | 0.011991 | |||
Positive | Positive_clone | T05A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4996 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00035567 | |||||||||
WBPaper00040135 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064064 | |||||||||
WBPaper00064315 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |