WormBase Tree Display for Gene: WBGene00001952
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| WBGene00001952 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T15H9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | hlh-6 | Person_evidence | WBPerson346 | |||||
| Sequence_name | T15H9.3 | ||||||||
| Molecular_name | T15H9.3 | ||||||||
| T15H9.3.1 | |||||||||
| CE01666 | |||||||||
| Other_name | CELE_T15H9.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | hlh-6 | ||||||||
| DB_info | Database | AceView | gene | 2J902 | |||||
| WormQTL | gene | WBGene00001952 | |||||||
| WormFlux | gene | WBGene00001952 | |||||||
| NDB | locus_tag | CELE_T15H9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001952|UniProtKB=Q10007 | |||||||
| family | PTHR13935 | ||||||||
| NCBI | gene | 188539 | |||||||
| RefSeq | protein | NM_063669.2 | |||||||
| SwissProt | UniProtAcc | Q10007 | |||||||
| TREEFAM | TREEFAM_ID | TF322889 | |||||||
| UniProt_GCRP | UniProtAcc | Q10007 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hlh | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00007726 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001950 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001951 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001958 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in several processes, including pharyngeal gland morphogenesis; positive regulation of eating behavior; and positive regulation of pharynx morphogenesis. Located in cell projection and nucleus. Is an ortholog of human ASCL3 (achaete-scute family bHLH transcription factor 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T15H9.3 | |||||||
| Corresponding_transcript | T15H9.3.1 | ||||||||
| Other_sequence | JI471571.1 | ||||||||
| Oden_isotig18195 | |||||||||
| MH09279 | |||||||||
| Acan_isotig16348 | |||||||||
| MHC06196_1 | |||||||||
| JI210812.1 | |||||||||
| Dviv_isotig05120 | |||||||||
| JK315945.1 | |||||||||
| Dviv_isotig05119 | |||||||||
| Associated_feature | WBsf047663 | ||||||||
| WBsf047664 | |||||||||
| WBsf047665 | |||||||||
| WBsf047666 | |||||||||
| WBsf047667 | |||||||||
| WBsf047668 | |||||||||
| WBsf047669 | |||||||||
| WBsf650438 | |||||||||
| WBsf978313 | |||||||||
| Gene_product_binds | WBsf047523 | ||||||||
| WBsf047524 | |||||||||
| WBsf047525 | |||||||||
| WBsf047526 | |||||||||
| WBsf047527 | |||||||||
| WBsf047528 | |||||||||
| WBsf047552 | |||||||||
| WBsf047664 | |||||||||
| WBsf047665 | |||||||||
| Transcription_factor | WBTranscriptionFactor000132 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00097165 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035598 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097163 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097164 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086258 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053388 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6698 | ||||||||
| Expr1021322 | |||||||||
| Expr1031136 | |||||||||
| Expr1156965 | |||||||||
| Expr2012512 | |||||||||
| Expr2030751 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product | WBCnstr00016911 | ||||||||
| WBCnstr00036566 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | II | Position | 1.61757 | Error | 0.000619 | |||
| Positive | Positive_clone | T15H9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4330 | |||||||
| Pseudo_map_position | |||||||||
| Reference (27) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
