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WormBase Tree Display for Gene: WBGene00001831

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Name Class

WBGene00001831SMapS_parentSequenceF58A4
IdentityVersion1
NameCGC_namehcp-3Person_evidenceWBPerson537
Sequence_nameF58A4.3
Molecular_nameF58A4.3
F58A4.3.1
CE00219
Other_nameCeCENP-APaper_evidenceWBPaper00026659
CENP-APaper_evidenceWBPaper00053817
CELE_F58A4.3Accession_evidenceNDBBX284603
Public_namehcp-3
DB_infoDatabaseAceViewgene3K704
WormQTLgeneWBGene00001831
WormFluxgeneWBGene00001831
NDBlocus_tagCELE_F58A4.3
PanthergeneCAEEL|WormBase=WBGene00001831|UniProtKB=P34470
familyPTHR11426
NCBIgene176359
RefSeqproteinNM_066727.7
SwissProtUniProtAccP34470
TREEFAMTREEFAM_IDTF352440
UniProt_GCRPUniProtAccP34470
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhcp
Allele (12)
StrainWBStrain00036564
WBStrain00034729
RNASeq_FPKM (74)
GO_annotation (35)
OrthologWBGene00055057Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00061530Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00031517Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00141307Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00134749Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00231221Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8639Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g230Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8150Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14049Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g14835Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3231Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5164Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12880Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17348Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5780Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19540Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g3410Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00069.g3322Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g10777Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9325Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00091.g3992Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03463.g30280Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_008762Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_009479Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01136Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30196700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8666Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241991Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00116322Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00118191Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00291460Trichuris murisFrom_analysisWormBase-Compara
WBGene00298411Trichuris murisFrom_analysisWormBase-Compara
WBGene00298444Trichuris murisFrom_analysisWormBase-Compara
WBGene00300888Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0040477Drosophila melanogasterFrom_analysisInparanoid
Panther
Paralog (24)
Structured_descriptionConcise_descriptionThe hcp-3 gene encodes a centromere protein (CENP)-A homolog required for kinetochore function; inactivation of hcp-3 in one-cell embryos by RNAi causes a complete loss of kinetochores, with total failure of chromosomes to segregate properly during mitosis, to recruit components to the kinetochore other than HCP-3, or to assemble a stable mitotic spindle; in addition, HCP-4 fails to localize properly to the kinetochore in hcp-3(RNAi) embryos.Paper_evidenceWBPaper00003702
WBPaper00004736
Curator_confirmedWBPerson567
Date_last_updated16 Dec 2005 00:00:00
Automated_descriptionPredicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in several processes, including negative regulation of mitotic centrosome separation; non-membrane-bounded organelle assembly; and protein localization to chromosome. Located in kinetochore and nucleus. Expressed in embryonic cell; hyp3; hyp4; hyp7 syncytium; and seam cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58A4.3
Corresponding_transcriptF58A4.3.1
Other_sequenceCBC08194
Associated_featureWBsf651390
WBsf993732
WBsf227335
Experimental_infoRNAi_result (32)
Expr_pattern (11)
Drives_constructWBCnstr00014536
WBCnstr00022767
WBCnstr00022768
WBCnstr00036660
Construct_productWBCnstr00014534
WBCnstr00014535
WBCnstr00014536
WBCnstr00022767
WBCnstr00036660
AntibodyWBAntibody00000241
WBAntibody00000379
WBAntibody00000811
WBAntibody00000812
WBAntibody00001030
WBAntibody00002323
WBAntibody00002956
Microarray_results (17)
Expression_cluster (172)
Interaction (233)
Map_infoMapIIIPosition0.752765Error0.006625
PositivePositive_cloneF58A4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (42)
RemarkSequence connection from [Moore LL, Roth MB]. krb 13/11/01
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene