Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00001808

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00001808EvidencePerson_evidenceWBPerson1846
SMapS_parentSequenceT10G3
IdentityVersion1
NameCGC_namegut-2Person_evidenceWBPerson579
Sequence_nameT10G3.6
Molecular_nameT10G3.6a
T10G3.6a.1
CE37990
T10G3.6b
CE45330
T10G3.6b.1
Other_namelsm-2CGC_data_submission
CELE_T10G3.6Accession_evidenceNDBBX284605
Public_namegut-2
DB_infoDatabaseAceViewgene5N979
WormQTLgeneWBGene00001808
WormFluxgeneWBGene00001808
NDBlocus_tagCELE_T10G3.6
PanthergeneCAEEL|WormBase=WBGene00001808|UniProtKB=P92022
familyPTHR13829
NCBIgene179833
RefSeqproteinNM_001269582.2
NM_001269583.3
TREEFAMTREEFAM_IDTF314960
TrEMBLUniProtAccP92022
E1B6V1
UniProt_GCRPUniProtAccP92022
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgut
Allele (31)
Legacy_information[C.elegansII] lw6 : E cells fail to gastrulate, division rate does not slow; mutant EMS not responsive to WT P2 induction. lw6/Df similar. OA>10: it92, lw63 (Gro, sterile). Cloned: cosmid rescue (T10G8). [EH; CB]
[Shaw JE] lw6 and it92 are not null alleles. lw6 and it92 are recessive, strict maternal effect lethal. Dead embryos arrest development with approximately normal cell number but no morphogenesis. Dead embryos are highly penetrant for lack of both differentiated gut cells and pharyngeal muscle. Other tissues (hypodermal, neuronal, body-wall muscle) are present. Early defects in E lineage,i.e. early 2E to 4E division and failure to gastrulate, highly penetrant. Null phenotype likely recessive slow-growing, sterile adult.
StrainWBStrain00036163
WBStrain00036228
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00052810Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00178269Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00219508Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00225169Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g752Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11031Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19820Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3074Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19093Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g12092Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8261Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1971Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9165Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7743Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-gut-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold282.g735Caenorhabditis tropicalisFrom_analysisWormBase-Compara
FL83_03811Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018587Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04456Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23206Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50160300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16259Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239021Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00112087Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264816Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290231Trichuris murisFrom_analysisWormBase-Compara
WBGene00301162Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000122Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0036277Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-000616-10Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:13940Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:90676Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1598536Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
Structured_descriptionConcise_descriptiongut-2 encodes a member of the Sm protein family with highest similarity to human U6 snRNA-associated Sm-like protein, LSm2, that affects embryonic viability.Paper_evidenceWBPaper00012624
WBPaper00023072
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in P-body. Predicted to be part of Lsm1-7-Pat1 complex and ribonucleoprotein complex. Is an ortholog of human LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST10G3.6a
T10G3.6b
Corresponding_CDS_historyT10G3.6:wp138
Corresponding_transcriptT10G3.6a.1
T10G3.6b.1
Other_sequence (54)
Associated_featureWBsf647462
WBsf662028
WBsf232784
Experimental_infoRNAi_result (28)
Expr_patternExpr1016964
Expr1031059
Expr1156677
Expr2012349
Expr2030585
Microarray_results (20)
Expression_cluster (131)
Interaction (330)
Map_infoMapVPosition5.35258Error0.004597
Well_ordered
PositivePositive_cloneK10B8
T10G3Inferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeNegative_cloneR11G10
Mapping_data2_point7109
Multi_point3848
ReferenceWBPaper00012624
WBPaper00014687
WBPaper00015015
WBPaper00021955
WBPaper00022720
WBPaper00023072
WBPaper00038491
WBPaper00046572
WBPaper00055090
WBPaper00059527
RemarkThe gut-2 gene was merged with lsm-2 following advice from the CGC. gut-2 is the main name for this gene.CGC_data_submission
MethodGene