WormBase Tree Display for Gene: WBGene00001787
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WBGene00001787 | Evidence | Person_evidence | WBPerson1846 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y53F4B | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gst | ||||||
Allele (12) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00095918 | ||||||
00095919 | |||||||
Ortholog (46) | |||||||
Paralog (45) | |||||||
Structured_description | Automated_description | Enriched in g1; head mesodermal cell; intestine; muscle cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-three chemicals including glutathione; methylmercuric chloride; and rotenone based on proteomic; microarray; and RNA-seq studies. Human HPGDS enables metal ion binding activity; prostaglandin-D synthase activity; and protein homodimerization activity. Is predicted to encode a protein with the following domains: Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain superfamily; Glutathione S-transferase, C-terminal; and Thioredoxin-like superfamily. Is an ortholog of human HPGDS (hematopoietic prostaglandin D synthase). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y53F4B.33 | |||||
Corresponding_transcript | Y53F4B.33.1 | ||||||
Other_sequence (27) | |||||||
Associated_feature | WBsf716535 | ||||||
WBsf990918 | |||||||
WBsf1013959 | |||||||
WBsf224322 | |||||||
Experimental_info | RNAi_result | WBRNAi00057289 | Inferred_automatically | RNAi_primary | |||
WBRNAi00020946 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00115485 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00115548 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037427 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1027417 | ||||||
Expr1160726 | |||||||
Expr2012322 | |||||||
Expr2030558 | |||||||
Drives_construct | WBCnstr00036685 | ||||||
Construct_product | WBCnstr00036685 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (222) | |||||||
Interaction (23) | |||||||
Map_info | Map | II | Position | 24.3474 | Error | 0.007795 | |
Positive | Positive_clone | Y53F4B | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00031973 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |