WormBase Tree Display for Gene: WBGene00001775
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| WBGene00001775 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y53F4B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gst-27 | |||||||
| Sequence_name | Y53F4B.30 | ||||||||
| Molecular_name | Y53F4B.30 | ||||||||
| Y53F4B.30.1 | |||||||||
| CE22417 | |||||||||
| Other_name | CELE_Y53F4B.30 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | gst-27 | ||||||||
| DB_info | Database | AceView | gene | 2P452 | |||||
| WormQTL | gene | WBGene00001775 | |||||||
| WormFlux | gene | WBGene00001775 | |||||||
| NDB | locus_tag | CELE_Y53F4B.30 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001775|UniProtKB=Q9NAB3 | |||||||
| family | PTHR11571 | ||||||||
| NCBI | gene | 175166 | |||||||
| RefSeq | protein | NM_064715.7 | |||||||
| TREEFAM | TREEFAM_ID | TF353041 | |||||||
| TrEMBL | UniProtAcc | Q9NAB3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NAB3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gst | ||||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095922 | ||||||||
| Contained_in_operon | CEOP2664 | ||||||||
| Ortholog (48) | |||||||||
| Paralog (45) | |||||||||
| Structured_description | Automated_description | Enriched in PVP; arcade cell; head mesodermal cell; intestine; and mechanosensory neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and glp-1 based on microarray; RNA-seq; and proteomic studies. Is affected by fifteen chemicals including glutathione; nicotinic acid; and rotenone based on proteomic; RNA-seq; and microarray studies. Human HPGDS enables metal ion binding activity; prostaglandin-D synthase activity; and protein homodimerization activity. Is predicted to encode a protein with the following domains: Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain superfamily; Glutathione S-transferase, C-terminal; and Thioredoxin-like superfamily. Is an ortholog of human HPGDS (hematopoietic prostaglandin D synthase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53F4B.30 | |||||||
| Corresponding_transcript | Y53F4B.30.1 | ||||||||
| Other_sequence | ES741808.1 | ||||||||
| HBC24217_1 | |||||||||
| Associated_feature | WBsf650775 | ||||||||
| WBsf1013958 | |||||||||
| WBsf224318 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00115541 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115476 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001350 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020943 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057285 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028225 | ||||||||
| Expr1160723 | |||||||||
| Expr2012311 | |||||||||
| Expr2030547 | |||||||||
| Drives_construct | WBCnstr00036696 | ||||||||
| Construct_product | WBCnstr00036696 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (233) | |||||||||
| Interaction | WBInteraction000469400 | ||||||||
| WBInteraction000550083 | |||||||||
| WBInteraction000551950 | |||||||||
| WBInteraction000561945 | |||||||||
| WBInteraction000563005 | |||||||||
| WBInteraction000570753 | |||||||||
| WBInteraction000571117 | |||||||||
| WBInteraction000577588 | |||||||||
| WBInteraction000579688 | |||||||||
| WBInteraction000586377 | |||||||||
| Map_info | Map | II | Position | 24.2692 | Error | 0.019721 | |||
| Positive | Positive_clone | Y53F4B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031973 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
