WormBase Tree Display for Gene: WBGene00001721
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| WBGene00001721 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_V | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-12 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F28A12.2 | ||||||||
| Molecular_name | F28A12.2 | ||||||||
| F28A12.2.1 | |||||||||
| CE34830 | |||||||||
| Other_name | CELE_F28A12.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-12 | ||||||||
| DB_info | Database | AceView | gene | 5J114 | |||||
| WormQTL | gene | WBGene00001721 | |||||||
| WormFlux | gene | WBGene00001721 | |||||||
| NDB | locus_tag | CELE_F28A12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001721|UniProtKB=Q22969 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 185037 | |||||||
| RefSeq | protein | NM_072828.5 | |||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q22969 | |||||||
| UniProt_GCRP | UniProtAcc | Q22969 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00032733 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-12 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground-like (Grl) domain; the Grl domain ispredicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in AMsoL and AMsoR. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28A12.2 | |||||||
| Corresponding_CDS_history | F28A12.2:wp105 | ||||||||
| Corresponding_transcript | F28A12.2.1 | ||||||||
| Other_sequence | Acan_isotig04531 | ||||||||
| Acan_isotig04532 | |||||||||
| Associated_feature | WBsf652862 | ||||||||
| WBsf234121 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045771 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014018 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4452 | ||||||||
| Expr1012038 | |||||||||
| Expr1149683 | |||||||||
| Expr2012246 | |||||||||
| Expr2030482 | |||||||||
| Drives_construct | WBCnstr00012017 | ||||||||
| WBCnstr00036739 | |||||||||
| Construct_product | WBCnstr00036739 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction | WBInteraction000193413 | ||||||||
| WBInteraction000276231 | |||||||||
| WBInteraction000420193 | |||||||||
| WBInteraction000438989 | |||||||||
| Map_info | Map | V | Position | 1.52824 | Error | 0.005322 | |||
| Positive | Positive_clone | F28A12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
