WormBase Tree Display for Gene: WBGene00001714
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| WBGene00001714 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47D7A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-5 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y47D7A.5 | ||||||||
| Molecular_name | Y47D7A.5 | ||||||||
| Y47D7A.5.1 | |||||||||
| CE22065 | |||||||||
| Other_name | Y47D7A.j | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y47D7A.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | grl-5 | ||||||||
| DB_info | Database | AceView | gene | 5E892 | |||||
| WormQTL | gene | WBGene00001714 | |||||||
| WormFlux | gene | WBGene00001714 | |||||||
| NDB | locus_tag | CELE_Y47D7A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001714|UniProtKB=Q9N3V3 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 178837 | |||||||
| RefSeq | protein | NM_071815.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | Q9N3V3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3V3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00032702 | ||||||||
| WBStrain00032726 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-5 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermal cell; hypodermis; rectal epithelium; and ventral cord blast cell. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y47D7A.5 | |||||||
| Corresponding_transcript | Y47D7A.5.1 | ||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf652572 | ||||||||
| WBsf999783 | |||||||||
| WBsf233580 | |||||||||
| WBsf233581 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037176 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020714 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056786 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4444 | ||||||||
| Expr15720 | |||||||||
| Expr16251 | |||||||||
| Expr1014445 | |||||||||
| Expr1031026 | |||||||||
| Expr1160243 | |||||||||
| Expr2012270 | |||||||||
| Expr2030506 | |||||||||
| Drives_construct | WBCnstr00012008 | ||||||||
| WBCnstr00036746 | |||||||||
| WBCnstr00042493 | |||||||||
| Construct_product | WBCnstr00036746 | ||||||||
| WBCnstr00042493 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (269) | |||||||||
| Interaction | WBInteraction000548809 | ||||||||
| Map_info | Map | V | Position | -5.5777 | Error | 0.031179 | |||
| Positive | Positive_clone | Y47D7A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028754 | ||||||||
| WBPaper00031588 | |||||||||
| WBPaper00058700 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
