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WormBase Tree Display for Gene: WBGene00001690

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Name Class

WBGene00001690EvidencePaper_evidenceWBPaper00003717
SMapS_parentSequenceR08B4
IdentityVersion1
NameCGC_namegrd-1Person_evidenceWBPerson83
Sequence_nameR08B4.1
Molecular_nameR08B4.1
R08B4.1.1
CE34080
R08B4.1.2
Other_nameCELE_R08B4.1Accession_evidenceNDBBX284606
Public_namegrd-1
DB_infoDatabaseAceViewgeneXL733
WormQTLgeneWBGene00001690
WormFluxgeneWBGene00001690
NDBlocus_tagCELE_R08B4.1
PanthergeneCAEEL|WormBase=WBGene00001690|UniProtKB=Q7YXC8
familyPTHR46706
NCBIgene181300
RefSeqproteinNM_001029672.3
TrEMBLUniProtAccQ21835
UniProt_GCRPUniProtAccQ21835
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgrd
Allele (93)
StrainWBStrain00035810
RNASeq_FPKM (74)
GO_annotation00073085
00073086
00109334
OrthologWBGene00058345Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037055Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00191898Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130189Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00102559Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g2986Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11794Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g11795Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g3391Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g7591Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12207Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18709Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15881Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25213Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1390Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21744Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g21745Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g21747Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g14941Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28830Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6514Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g6515Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00629.g12957Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00629.g12958Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_01437.g16412Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g23274Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold515.g2657Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01579.g21859Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01182Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023719Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01537Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05458Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06531Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10080Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14633Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0001210Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0082820Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20010Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00214047Caenorhabditis japonicaFrom_analysisWormBase-Compara
FB:FBgn0004644Drosophila melanogasterFrom_analysisEnsEMBL-Compara
PhylomeDB
ZFIN:ZDB-GENE-980526-135Danio rerioFrom_analysisEnsEMBL-Compara
PhylomeDB
ZFIN:ZDB-GENE-051010-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoInspector
Paralog (24)
Structured_descriptionConcise_descriptiongrd-1 encodes a hedgehog-like protein, with (from N- to C-terminus) asignal sequence, a Ground domain, an extended region of low-complexitysequence, and a Hint/Hog domain; GRD-1 is expressed in rectal cells; theHint/Hog domain is predicted to cut GRD-1 into two halves and thencovalently link cholesterol to the C-terminus of the Ground domain; theGround domain is predicted to form a cysteine-crosslinked proteininvolved in intercellular signalling, and it has subtle similarity tothe N-terminal Hedge domain of HEDGEHOG proteins; GRD-1 is weaklyrequired for normal molting; GRD-1 is also required for normal growth tofull size, cuticle adhesion, and male tail development; all of theserequirements may reflect common defects in cholesterol-dependenthedgehog-like signalling or in vesicle trafficking.Paper_evidenceWBPaper00003717
WBPaper00026841
WBPaper00027263
Curator_confirmedWBPerson48
WBPerson567
Date_last_updated05 Nov 2006 00:00:00
Automated_descriptionActs upstream of or within nematode male tail mating organ morphogenesis. Predicted to be located in extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR08B4.1
Corresponding_CDS_historyR08B4.1:wp52
R08B4.1:wp83
R08B4.1:wp101
R08B4.1b:wp272
Corresponding_transcriptR08B4.1.1
R08B4.1.2
Other_sequence (17)
Associated_featureWBsf648520
WBsf648521
WBsf1023814
Experimental_infoRNAi_resultWBRNAi00076990Inferred_automaticallyRNAi_primary
WBRNAi00077015Inferred_automaticallyRNAi_primary
WBRNAi00051525Inferred_automaticallyRNAi_primary
WBRNAi00017576Inferred_automaticallyRNAi_primary
WBRNAi00111006Inferred_automaticallyRNAi_primary
Expr_patternExpr633
Expr4417
Expr1026738
Expr1031009
Expr1155201
Expr2012231
Expr2030467
Drives_constructWBCnstr00011978
WBCnstr00012457
WBCnstr00036766
Construct_productWBCnstr00036766
Microarray_results (27)
Expression_cluster (197)
InteractionWBInteraction000114598
WBInteraction000114599
WBInteraction000114607
WBInteraction000173618
WBInteraction000237583
WBProcessWBbiopr:00000123
Map_infoMapXPosition2.85852Error0.000413
PositivePositive_cloneR08B4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4384
4421
5511
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene